View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_high_9 (Length: 452)

Name: NF11644_high_9
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_high_9
NF11644_high_9
[»] chr4 (1 HSPs)
chr4 (23-452)||(13615515-13615944)
[»] chr1 (4 HSPs)
chr1 (219-451)||(7582492-7582724)
chr1 (23-211)||(7582989-7583177)
chr1 (23-166)||(7098069-7098212)
chr1 (286-410)||(7098589-7098713)
[»] chr5 (9 HSPs)
chr5 (277-449)||(17982083-17982255)
chr5 (45-211)||(17981619-17981785)
chr5 (277-346)||(4380823-4380892)
chr5 (227-299)||(30205625-30205697)
chr5 (277-346)||(30339394-30339463)
chr5 (219-346)||(30059464-30059591)
chr5 (281-346)||(29871355-29871420)
chr5 (277-346)||(30243241-30243310)
chr5 (281-346)||(30399234-30399299)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 23 - 452
Target Start/End: Original strand, 13615515 - 13615944
Alignment:
Q  23 tgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattga 122  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13615515 tgggcatccaaaaatattcaacgaatcaagtgcaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattga 13615614  T
Q  123 agtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaaagattatcatc 222  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  13615615 agtgattgccgacctccccataatttctctggtaaatactcaagttcgtggcaaatccggatattaagatgctccaaagctaagttgaaagattctcatc 13615714  T
Q  223 tcctctctttccacttttaacaacctatctaagtttggtaagtcttctattattagtacctccagagatgggaaaattctcatctccacaccattttcaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13615715 tcctctctttccacttttaacaacctatctaagtttggtaagtcttctattattagttcctccagagatgggaaaattctcatctccacaccattttcaa 13615814  T
Q  323 attcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgagaaccgttctcactgcatgca 422  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  13615815 attcatcctcattcaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgaaaaccgttctcaatgcacgca 13615914  T
Q  423 atccttaactttaagtgtaactaaattact 452  Q
    ||||||||||||||| ||||||||||||||    
T  13615915 atccttaactttaagagtaactaaattact 13615944  T

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Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 219 - 451
Target Start/End: Complemental strand, 7582724 - 7582492
Alignment:
Q  219 catctcctctctttccacttttaacaacctatctaagtttggtaagtcttctattattagtacctccagagatgggaaaattctcatctccacaccattt 318  Q
    |||||||| | |||||||||| |||||||  ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||  |||| ||||||     
T  7582724 catctcctttttttccactttcaacaacccctctaagtttggtaagtcatcaattataagtacctcaagagatgggaaaattctcacttccaaaccattg 7582625  T
Q  319 tcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgagaaccgttctcactgca 418  Q
    | ||||||||| |||||||||| ||||||||||||   || ||  || |||  |||||||||||||||||||||||||||||| |||||||| || ||||    
T  7582624 tgaaattcatcatcatccaagtatttcacagacaccaaggttatttgaagtgtttttagagatggtagtttaccaagtgatgaaaaccgttcacagtgca 7582525  T
Q  419 tgcaatccttaactttaagtgtaactaaattac 451  Q
    ||||| |||||| || ||| |||||||||||||    
T  7582524 tgcaacccttaatttcaagagtaactaaattac 7582492  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 7583177 - 7582989
Alignment:
Q  23 tgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattga 122  Q
    ||||||||||   ||||||||| ||||||||| | |||||||||||||||| || | || ||||||||||||   ||||  || ||||  ||| |||||     
T  7583177 tgggcatccagcaatattcaacaaatcaagtgcagtgaggtgtctaataccatctggcaagcattttaattttttacaacaataaatcctcatggattgt 7583078  T
Q  123 agtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaa 211  Q
    ||||||||   ||||||||||| ||||||| ||||||||||||| || | |||||    |||||| |||||||||||| ||||||||||    
T  7583077 agtgattgcaaacctccccatattttctctggtaaatactcaagctcatcgcaaaaagcgatattcagatgctccaaaactaggttgaa 7582989  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 7098069 - 7098212
Alignment:
Q  23 tgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattga 122  Q
    |||||||||||  ||| |||||||||||||||   |||||||||||||||| || | || |||||||||| |   ||||| |  ||||  ||||||||||    
T  7098069 tgggcatccaacaatagtcaacgaatcaagtgcggtgaggtgtctaataccatctggcaagcattttaatctttcacaataagaaatcctcatagattga 7098168  T
Q  123 agtgattgtcgacctccccataatttctctagtaaatactcaag 166  Q
    ||||||||  |||||||||||| ||||||| |||||||||||||    
T  7098169 agtgattgcagacctccccatattttctctggtaaatactcaag 7098212  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 410
Target Start/End: Original strand, 7098589 - 7098713
Alignment:
Q  286 agagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggta 385  Q
    |||||||||||||| || | ||||| |||||| | ||||||||  |||||||||| ||||||||||||   | ||||   ||||| ||||||| ||||||    
T  7098589 agagatgggaaaatccttacctccataccattgtgaaattcattatcatccaagtatttcacagacacaccgaataatatgagtttttttagatatggta 7098688  T
Q  386 gtttaccaagtgatgagaaccgttc 410  Q
    |||||||||||||||| ||||||||    
T  7098689 gtttaccaagtgatgaaaaccgttc 7098713  T

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Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 277 - 449
Target Start/End: Original strand, 17982083 - 17982255
Alignment:
Q  277 agtacctccagagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttctttta 376  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |||  |  |||| |||||    
T  17982083 agtatctccagagatgggaaatttatcatctccacaccattttcaaattcatcatcatccaagtatttcacagacacattgaatagttcaagttttttta 17982182  T
Q  377 gagatggtagtttaccaagtgatgagaaccgttctcactgcatgcaatccttaactttaagtgtaactaaatt 449  Q
    ||||||||||||||||||||||||| |||||||| ||  ||||||||||||||||  |||| |||| ||||||    
T  17982183 gagatggtagtttaccaagtgatgaaaaccgttcacaaagcatgcaatccttaacaataagagtaagtaaatt 17982255  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 17981619 - 17981785
Alignment:
Q  45 gaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattgaagtgattgtcgacctccccata 144  Q
    |||||||||| | | ||||||||||||||||||| || |||||| ||||| | ||||| |  ||||||||||||||||||||||||  ||||||||||||    
T  17981619 gaatcaagtgcagtaaggtgtctaataccgtccggcaagcatttcaatttcctacaatcaacaatcaccatagattgaagtgattgcagacctccccata 17981718  T
Q  145 atttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaa 211  Q
     ||||||| ||||||||||||| ||| |||| |    |||||  ||||||| |||||||||||||||    
T  17981719 ttttctctggtaaatactcaagctcgctgcacaaattgatatccagatgcttcaaagctaggttgaa 17981785  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 4380823 - 4380892
Alignment:
Q  277 agtacctccagagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttca 346  Q
    ||||||||||||||||||||||  |||| ||||| |||||  ||||||||||| |||||||||| |||||    
T  4380823 agtacctccagagatgggaaaaccctcacctccataccatcctcaaattcatcatcatccaagtatttca 4380892  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 30205625 - 30205697
Alignment:
Q  227 ctctttccacttttaacaacctatctaagtttggtaagtcttctattattagtacctccagagatgggaaaat 299  Q
    ||||||||||||| || ||||  ||||||||||||| |  ||||| ||| |||||||||||||||||||||||    
T  30205625 ctctttccactttcaataacccttctaagtttggtaggatttctaatatgagtacctccagagatgggaaaat 30205697  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 30339463 - 30339394
Alignment:
Q  277 agtacctccagagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttca 346  Q
    ||||||||||||||||||||||  |||| ||||| |||||  ||| ||||||| |||||||||| |||||    
T  30339463 agtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 30339394  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 30059464 - 30059591
Alignment:
Q  219 catctcctctctttccacttttaacaacctatctaagtttggtaagtcttctattattagtacctccagagatgggaaaattctcatctccacaccattt 318  Q
    ||||||| ||||||||||||| || || |  |||| ||||||||| |  | || ||  ||| ||||||||||||||||||  |||| ||||| |||||      
T  30059464 catctcccctctttccactttcaataaaccctctatgtttggtaactgatataatacgagttcctccagagatgggaaaaccctcacctccataccatcc 30059563  T
Q  319 tcaaattcatcctcatccaagtgtttca 346  Q
    ||| ||||||| |||||||||| |||||    
T  30059564 tcagattcatcatcatccaagtatttca 30059591  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 29871355 - 29871420
Alignment:
Q  281 cctccagagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttca 346  Q
    ||||||||||||||||||| |||| ||||| |||||  | | ||||||| |||||||||| |||||    
T  29871355 cctccagagatgggaaaatcctcacctccataccatcctgagattcatcatcatccaagtatttca 29871420  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 30243310 - 30243241
Alignment:
Q  277 agtacctccagagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttca 346  Q
    |||||||| |||||||||||||  |||| ||||| |||||  ||| ||||||| |||||||||| |||||    
T  30243310 agtacctctagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 30243241  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 30399234 - 30399299
Alignment:
Q  281 cctccagagatgggaaaattctcatctccacaccattttcaaattcatcctcatccaagtgtttca 346  Q
    ||||||||||||||||||  |||| |||||||||||  | | ||||||| |||||||||| |||||    
T  30399234 cctccagagatgggaaaaccctcacctccacaccatcctgagattcatcatcatccaagtatttca 30399299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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