View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_1 (Length: 682)
Name: NF11644_low_1
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Complemental strand, 30474774 - 30474119
Alignment:
| Q |
18 |
gttctcgcattgaatcttttcttcatagcagcaaggaatggttctatattgatttcccccattctctttacaccaatatgtttgtcacttgttgacattt |
117 |
Q |
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| T |
30474774 |
gttctcgcattgaatcttttcttcatagcagcaaggaatggttctatattgatttcccccattctctttacaccaatatgtttgtcactggttgacattt |
30474675 |
T |
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| Q |
118 |
ctttaatgacctgagagatgcaaaaactctttaacaattgtcaagaaaagaaataacaaacagtaaatatgtattttcaaaacatataatgcatacttta |
217 |
Q |
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| T |
30474674 |
ctttaatgacctgagagatgcaaaaactcttgaacgattgtcaagaaaagaaataacaaacagtaaatatgtatgttcaaaacatataatgcatacttta |
30474575 |
T |
|
| Q |
218 |
agcaatgtgacaaacaagaagtgaattcgtagaaaagtacagtttagtcttgtctgcataatccgatgaaacnnnnnnncaaggagcaaaacaagccaac |
317 |
Q |
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| T |
30474574 |
agcaatgtgacaaacaagaagtgaattcgtagaaaagtacagtttagtcttgtctgcataatccgatgaaacaaaaaaacaaggagcaaaacaagacaac |
30474475 |
T |
|
| Q |
318 |
aggtaactagatttcactattctgatcacacacacaacaccatagatgttattcattcaactttaaacaggcaagtaaaatcatattaaaataaaaggaa |
417 |
Q |
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| T |
30474474 |
aggtaactagatttcactattctgatcacacacacaacaccatagatgttattcattcaactttaaacaggcaagtaaaatcatattaaaataaaaggaa |
30474375 |
T |
|
| Q |
418 |
caaaagtttatcagcccatgagccaaaaaagtaaactagatgatcattgatcatcaaatgagtaaaatttgaagggacaaaaacacttacacgaatcaat |
517 |
Q |
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| T |
30474374 |
caaaagtttatcagcccatgagccaaaaaagtaaact--atgatcattgatcatcaaatgagtaaaatttgaagggacaaaaacacttacacaaatcaat |
30474277 |
T |
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| Q |
518 |
tcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaactcttctttgtcac |
617 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
30474276 |
tcttttcgagcatccaacaactcatcattactccgacgctccttaatgattagtgttaggttcaaatcatttaagtcttcaagtaactcttctttgtcac |
30474177 |
T |
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| Q |
618 |
ttaaatccatccgcaaagcatctacctttttcaaaagatcctcatcttcttcatctct |
675 |
Q |
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| T |
30474176 |
ttaaatccatccgcaaagcatctacctctttcaaaagatcctcatcttcttcatctct |
30474119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 504 - 645
Target Start/End: Complemental strand, 30466046 - 30465905
Alignment:
| Q |
504 |
ttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaa |
603 |
Q |
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| T |
30466046 |
ttacatgaatcaatatttttcgagcatattgcaactcatcattactcttatgctccttaatgattagtttttggttaaattcttctaactcttcaagtga |
30465947 |
T |
|
| Q |
604 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctt |
645 |
Q |
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| T |
30465946 |
ctcttctttgtctctcaaattcatcagcaaagcatctacctt |
30465905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 502 - 653
Target Start/End: Complemental strand, 30447249 - 30447098
Alignment:
| Q |
502 |
acttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaatt |
601 |
Q |
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|||||||| |||||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| | | |||||||| || | |
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| T |
30447249 |
acttacactgatcaattcttttcgagcatcttgcagctcatcgttactcttacgctccttgatgattagtgtttggttcagtgcatctaagtcttgaagt |
30447150 |
T |
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| Q |
602 |
aactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaa |
653 |
Q |
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||| ||| || || |||||| |||| ||||| |||||||||| ||||||| |
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| T |
30447149 |
gactgttccttctcccttaaacccatatgcaaatcatctaccttcttcaaaa |
30447098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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