View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_10 (Length: 452)
Name: NF11644_low_10
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 36739831 - 36739396
Alignment:
| Q |
18 |
catcccagcctccaaaatccttcaacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtcgtaccacccagcatctgatgccaacc |
117 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
36739831 |
catcccagactccaaaatccgtcaacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtccaaccactcagcatctgatgccaacc |
36739732 |
T |
|
| Q |
118 |
aggctgttttcactgaaattttagcg------ggagctttggaaggcgacaagttttatcagaagattaggtatattttgtttctctactaactgtgatg |
211 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
36739731 |
aggctgttttcattgaaattttagcactgacaggagctttggaaggcgacaagttttatcaaaatattaggtatattttgtttctctactaactgtgatg |
36739632 |
T |
|
| Q |
212 |
tctgtaataaacctcccctaaagctgcaacaggtttattaaggttttgactgattgagaataactcttgtttctaagtttcggtcttttatacacttctt |
311 |
Q |
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||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
36739631 |
tctgtaataaaccccccctaaagctgcagtaggtttattaatgttttgactgattgagaataacttttgtttctaagtttctgtcttttatacacttctt |
36739532 |
T |
|
| Q |
312 |
aatatgatatccattcttaaggtgtgtcctagtgatattttatagttgtcttgaatgtgtggttgtagataaactttcccctcggtacttcttgaaaaat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
36739531 |
aatatgatatccattcttaaggtgtgtcctagtgatattttatagttgtcttgaatgtgtgatagtagataaactttcccctcggtacttcttgaaaaat |
36739432 |
T |
|
| Q |
412 |
tgacataattgtaaacaagtatctgttcttctctct |
447 |
Q |
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| T |
36739431 |
tgacataattgtaaacaagtatctgttcttctctct |
36739396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 41 - 316
Target Start/End: Complemental strand, 36738180 - 36737900
Alignment:
| Q |
41 |
aacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtcgtaccacccagcatctgatgccaaccaggctgttttcactgaaatttta |
140 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
36738180 |
aacaattcaacaacaatcctcttaacttcttttatgtagagttgttgggtcctaccactcagcatctgatgccaaccaggctgttttcaatgaaatttta |
36738081 |
T |
|
| Q |
141 |
gc------gggagctttggaaggcgacaagttttatcagaagattaggtatattttgtttctctactaactgtgatgtctgtaataaacctcccctaaag |
234 |
Q |
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| T |
36738080 |
gcactgacgggagctttggaaggcgacaagttttatcagaagatt-gatatatttcgtttctctactaactgtgatgtctgtaataaacctcccctaaag |
36737982 |
T |
|
| Q |
235 |
ctgcaacaggtttattaaggttttgactgattgagaataactcttgtttctaagtttcggtcttttatacacttcttaatat |
316 |
Q |
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||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36737981 |
ctgcagcaggtttattaatgttttgattgattgagaataactcttgtttctaagtttctgtcttttatacacttcttaatat |
36737900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 36722277 - 36722133
Alignment:
| Q |
39 |
tcaacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtcgtaccacccagcatctgatgccaaccaggctgttttcactgaaattt |
138 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
36722277 |
tcaacaattcaacaacaatcctcttaacttcttctatgtagagctgttgggtcctaccactcagcatctgatgccaaccaggttgttttcactgaaattt |
36722178 |
T |
|
| Q |
139 |
tag------cgggagctttggaaggcgacaagttttatcagaaga |
177 |
Q |
| |
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||| | |||||||| ||||||||||||||||||||||||| |
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| T |
36722177 |
tagaactaacaggagctttagaaggcgacaagttttatcagaaga |
36722133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 36722338 - 36722397
Alignment:
| Q |
39 |
tcaacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtcgtaccac |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
36722338 |
tcaacaattcaacaacaatcctcttaacttcttctatgtagagctgttgggtcctaccac |
36722397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 36725662 - 36725732
Alignment:
| Q |
28 |
tccaaaatccttcaacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtcgtaccac |
98 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||| |
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| T |
36725662 |
tccaaaatccatcaacaattaaacaacaatcttcttaacttcttctatgtagagctgttgggtcctaccac |
36725732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 36739872 - 36739949
Alignment:
| Q |
18 |
catcccagcctccaaaatccttcaacaattcaacaacaatcctcttaacttcttctatgtagagctattgggtcgtaccac |
98 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| | ||||||| |||||| |
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|
| T |
36739872 |
catcccatcctccaaaatccatcaaaaattcaac---aatcctcttaacttcttatatgtagagttgttgggtcctaccac |
36739949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 36722334 - 36722296
Alignment:
| Q |
33 |
aatccttcaacaattcaacaacaatcctcttaacttctt |
71 |
Q |
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| T |
36722334 |
aatccatcaacaattcaacaacaatcctcttaacttctt |
36722296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 36737903 - 36737866
Alignment:
| Q |
184 |
atattttgtttctctactaactgtgatgtctgtaataa |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||| |
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| T |
36737903 |
atattttgtttctctgctaactgtgatgtctgtaataa |
36737866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 36739326 - 36739286
Alignment:
| Q |
188 |
tttgtttctctactaactgtgatgtctgtaataaacctccc |
228 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| |
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| T |
36739326 |
tttgtttctctgctaactgtgatgcctgtaataaacctccc |
36739286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 36725638 - 36725609
Alignment:
| Q |
39 |
tcaacaattcaacaacaatcctcttaactt |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
36725638 |
tcaacaattcaacaacaatcctcttaactt |
36725609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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