View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_11 (Length: 421)
Name: NF11644_low_11
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 22 - 407
Target Start/End: Original strand, 18167739 - 18168123
Alignment:
| Q |
22 |
ggagactcattttgtagcataacatctactttaggtggaaaatactcagcttctatttctgtaacctattgttacaaagttacttacattagacctttgt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18167739 |
ggagactcattttgtagcataacatctactttaggtggaaaatactctgcttctatttctgtaacctattgttacaaagttacttacattagacctt-gt |
18167837 |
T |
|
| Q |
122 |
aatagacaatatatttccaataataataaaagtgaaaatgtaccagttgaaatagaaaatcatgtgaaactctttggaagagataggatttctgcacaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18167838 |
aatagacaatatatttccaataataataaaagtgaaaatgtaccagttgaaatagaaaatcatgtgaaactctttggaagagataggatttctgcacaac |
18167937 |
T |
|
| Q |
222 |
aggataaaaaagatggtgtgcaatgcttgcgcgaattgctttcggcatgccatttattgtttcttgctgttttagtccttctgttttgaacttgagacat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18167938 |
aggataaaaaagatggtgtgcaatgcttgcgcgaattgctttcggcatgccatttattgtttcttgctgttttagtccttctgttttgaacttgagacat |
18168037 |
T |
|
| Q |
322 |
aagtgtgatagtatttgatcctgtgtctcatgaggtagatgattttttgatacaaattctgttgctgctcttactgtatctctctg |
407 |
Q |
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| T |
18168038 |
aagtgtgatagtatttgatcctgtgtctcatgaggtagatgattttttgatgcaaattctgttgctgctctcactgtatctctctg |
18168123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 22 - 407
Target Start/End: Original strand, 18631295 - 18631680
Alignment:
| Q |
22 |
ggagactcattttgtagcataacatctactttaggtggaaaatactcagcttctatttctgtaacctattgttacaaagttacttacattagacctttgt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18631295 |
ggagactcattttgtagcataacatctactttaggtggaaaatactctgcttctatttctgtaacctattgttacaaagttacttacattagacctt-gt |
18631393 |
T |
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| Q |
122 |
aatagacaatatatttccaataataataaaa-gtgaaaatgtaccagttgaaatagaaaatcatgtgaaactctttggaagagataggatttctgcacaa |
220 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18631394 |
aatagacaatatatttccaataataataaaaagtgaaaatgtaccagttgaaatagaaaatcatgtgaaactctttggaagagataggatttctgcacaa |
18631493 |
T |
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| Q |
221 |
caggataaaaaagatggtgtgcaatgcttgcgcgaattgctttcggcatgccatttattgtttcttgctgttttagtccttctgttttgaacttgagaca |
320 |
Q |
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| T |
18631494 |
caggataaaaaagatggtgtgcaatgcttgcgcgaattgctttcggcatgccatttattgtttcttgctgttttagtccttctgttttgaacttgagaca |
18631593 |
T |
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| Q |
321 |
taagtgtgatagtatttgatcctgtgtctcatgaggtagatgattttttgatacaaattctgttgctgctcttactgtatctctctg |
407 |
Q |
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| T |
18631594 |
taagtgtgatagtatttgatcctgtgtctcatgaggtagatgattttttgatgcaaattctgttgctgctctcactgtatctctctg |
18631680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 308
Target Start/End: Original strand, 6386743 - 6386861
Alignment:
| Q |
190 |
actctttggaagagataggatttctgcacaacaggataaaaaagatggtgtgcaatgcttgcgcgaattgctttcggcatgccatttattgtttcttgct |
289 |
Q |
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|||| ||||||||| ||| ||||||||||||||| |||| ||||||||||| ||||||| ||||| || || || | |||||| || |||||||| |
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| T |
6386743 |
actccttggaagaggtagaccttctgcacaacaggaaaaaagagatggtgtgcgatgcttgaccgaatcgcctttggaagatcatttaatgcttcttgct |
6386842 |
T |
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| Q |
290 |
gttttagtccttctgtttt |
308 |
Q |
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| || |||||||||||||| |
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| T |
6386843 |
gcttcagtccttctgtttt |
6386861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 6386526 - 6386594
Alignment:
| Q |
22 |
ggagactcattttgtagcataacatctactttaggtggaaaatactcagcttctatttctgtaacctat |
90 |
Q |
| |
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||||| |||||||| || || |||||| |||| ||||| |||||||||||||| ||||||| ||||||| |
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| T |
6386526 |
ggagattcattttgcagtatcacatcttcttttggtgggaaatactcagcttccatttctgaaacctat |
6386594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 46684168 - 46684208
Alignment:
| Q |
28 |
tcattttgtagcataacatctactttaggtggaaaatactc |
68 |
Q |
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| T |
46684168 |
tcattttgtaagataacatcttctttaggtggaaaatactc |
46684208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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