View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_low_13 (Length: 362)

Name: NF11644_low_13
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_low_13
NF11644_low_13
[»] chr8 (2 HSPs)
chr8 (1-298)||(32528313-32528610)
chr8 (1-298)||(26344518-26344815)
[»] chr4 (3 HSPs)
chr4 (5-298)||(28394100-28394393)
chr4 (6-289)||(1544402-1544685)
chr4 (186-288)||(25431577-25431679)
[»] chr1 (4 HSPs)
chr1 (80-298)||(6831777-6831995)
chr1 (295-351)||(51839270-51839326)
chr1 (6-289)||(26404035-26404318)
chr1 (186-288)||(49213419-49213521)
[»] chr2 (1 HSPs)
chr2 (114-289)||(43372845-43373022)
[»] scaffold0438 (1 HSPs)
scaffold0438 (205-298)||(14679-14772)
[»] chr7 (1 HSPs)
chr7 (240-289)||(30506893-30506942)
[»] chr6 (1 HSPs)
chr6 (240-289)||(7037106-7037155)
[»] chr5 (1 HSPs)
chr5 (240-289)||(17796524-17796573)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 32528610 - 32528313
Alignment:
Q  1 tcacatatctaagcaccctctttgctgccttgagatgacattcacttgctcaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528610 tcacatatctaagcaccctctttgctgccttgagatgacattcacttgcacaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccg 32528511  T
Q  101 tgtggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattc 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528510 catggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattc 32528411  T
Q  201 attggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatccttgctttg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  32528410 attggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcatttgacaaatgaaaattttatccttgctttg 32528313  T

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Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 26344815 - 26344518
Alignment:
Q  1 tcacatatctaagcaccctctttgctgccttgagatgacattcacttgctcaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26344815 tcacatatctaagcaccctctttgctgccttgagatgacattcacttgcacaatgcataaaccgagacaaaatgcttaccgcattcaaaatattaggccg 26344716  T
Q  101 tgtggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattc 200  Q
     |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26344715 cgtgggtgtcagatacatcaaacaaccgatcagacttctaaaatatgtttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattc 26344616  T
Q  201 attggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatccttgctttg 298  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26344615 attggagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgctttg 26344518  T

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Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 28394393 - 28394100
Alignment:
Q  5 atatctaagcaccctctttgctgccttgagatgacattcacttgctcaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccgtgtg 104  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  28394393 atatctaagcacccactttgctgccttgagatgacattcacttgcacaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccgcgtt 28394294  T
Q  105 gctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattcattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394293 gctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattcattg 28394194  T
Q  205 gagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatccttgctttg 298  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28394193 gagtgctcatttatctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgctttg 28394100  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 289
Target Start/End: Complemental strand, 1544685 - 1544402
Alignment:
Q  6 tatctaagcaccctctttgctgccttgagatgacattcacttgctcaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccgtgtgg 105  Q
    ||||||| ||||||||| || ||||| | ||||  ||| ||||| || ||||| |||||||| || || || || |||||||| || || || | ||| |    
T  1544685 tatctaaccaccctcttagcagccttcaaatgaatttcgcttgcacagtgcatgaaccgagataagatactcacagcattcaagatgtctggtcttgttg 1544586  T
Q  106 ctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattcattgg 205  Q
    |||| |||||||| |  || || |||||||||||||| || || |  || |  ||||||||| |||||||||| |  |  |||||||||  |||||| ||    
T  1544585 ctgtaagatacataaggcacccaatcagacttctaaagtaggcctcgtctactttttcagtttcatcttctttactcaacttctccttttgattcatagg 1544486  T
Q  206 agtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatc 289  Q
    |||||| | |    |||| ||||| |    ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  1544485 agtgcttactgacttgcaatcttccatacgaaattttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc 1544402  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 25431679 - 25431577
Alignment:
Q  186 ttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaattt 285  Q
    |||||||||  || ||| |||||| |||||  | ||||||| ||||| | ||| ||||||||||| || ||||||||||| || |||||||| ||||| |    
T  25431679 ttctccttttgatgcataggagtgttcattgttttgcattcatcaagctgaaattttttcaaaatctcctttgcatattttttctgacaaataaaaatct 25431580  T
Q  286 cat 288  Q
    |||    
T  25431579 cat 25431577  T

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Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 80 - 298
Target Start/End: Original strand, 6831777 - 6831995
Alignment:
Q  80 cgcattcaaaatatcaggccgtgtggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttg 179  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6831777 cgcattcaaaatatcaggccgcgtggttgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttg 6831876  T
Q  180 caaagtttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatga 279  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  6831877 ccaagcttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgg 6831976  T
Q  280 aaatttcatccttgctttg 298  Q
    |||||||||||||| ||||    
T  6831977 aaatttcatccttgatttg 6831995  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 51839270 - 51839326
Alignment:
Q  295 tttgaagaaaactaaacccacaaagccctccacacccatacataactcttcgttctt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51839270 tttgaagaaaactaaacccacaaagccctccacacccatacatagctcttcgttctt 51839326  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 289
Target Start/End: Complemental strand, 26404318 - 26404035
Alignment:
Q  6 tatctaagcaccctctttgctgccttgagatgacattcacttgctcaatgcataaaccgagacaaaatgcttaccgcattcaaaatatcaggccgtgtgg 105  Q
    ||||||| ||||||||| || ||||| | ||||  ||| ||||| || ||||| |||||||| || || || || |||||||| || || || | ||| |    
T  26404318 tatctaaccaccctcttagcagccttcaaatgaatttcgcttgcacagtgcatgaaccgagataagatactcacagcattcaagatgtctggtcttgttg 26404219  T
Q  106 ctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattcattgg 205  Q
    |||| |||||||| |  || || |||||||||||||| || || |  || |  ||||||||| |||||||||| |  |  |||||||||  |||||| ||    
T  26404218 ctgtaagatacataaggcacccaatcagacttctaaagtaggcctcgtctactttttcagtttcatcttctttactcaacttctccttttgattcatagg 26404119  T
Q  206 agtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatc 289  Q
    |||||| | |    |||| ||||| |    ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  26404118 agtgcttactgacttgcaatcttccatacgaaattttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc 26404035  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 49213521 - 49213419
Alignment:
Q  186 ttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaattt 285  Q
    |||||||||  || ||| |||||| |||||  | ||||||| ||||| | ||| ||||||||||| || ||||||||||| || |||||||| ||||| |    
T  49213521 ttctccttttgatgcataggagtgttcattgttttgcattcatcaagctgaaattttttcaaaatctcctttgcatattttttctgacaaataaaaatct 49213422  T
Q  286 cat 288  Q
    |||    
T  49213421 cat 49213419  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 114 - 289
Target Start/End: Complemental strand, 43373022 - 43372845
Alignment:
Q  114 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatctttt--cagttccatcttctttgcaaagtttctcctttgaattcattggagtgct 211  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||  ||||| |||||||||||| ||||||||| |||||||||||||||||| |    
T  43373022 tacatcaaacaaccaattagacttctaaaatacgcttgatcaatcttttttcagtttcatcttctttgcgaagtttctcttttgaattcattggagtggt 43372923  T
Q  212 catttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatc 289  Q
    ||||||  |||||||||| ||||||||||| || |  ||||||||||||||||| || |||||| | |||| ||||||    
T  43372922 catttcattgcattcttcgagtttaaacttcttaatgatttcttttgcatattttttctgacaacttaaaacttcatc 43372845  T

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Target: scaffold0438 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 14772 - 14679
Alignment:
Q  205 gagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatccttgctttg 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14772 gagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgctttg 14679  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 30506893 - 30506942
Alignment:
Q  240 tttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatc 289  Q
    ||||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  30506893 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc 30506942  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 7037155 - 7037106
Alignment:
Q  240 tttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatc 289  Q
    ||||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  7037155 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc 7037106  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 17796573 - 17796524
Alignment:
Q  240 tttttcaaaatttcttttgcatatttcttttgacaaatgaaaatttcatc 289  Q
    ||||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  17796573 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc 17796524  T

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