View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_16 (Length: 353)
Name: NF11644_low_16
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 31160954 - 31160763
Alignment:
| Q |
18 |
gtgatgatgagaagagctagaagtggttttaaagtgaattattgctaagaataaaacaacattaataacatagttgtttaatgaggatgccataattaac |
117 |
Q |
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| T |
31160954 |
gtgatgatgagaagagctagaagtggttttaaagtgaattattgctaagaataaaacaacattaataacatagttgtttaatgaggatgccataattaac |
31160855 |
T |
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| Q |
118 |
tatgcttgtgttaattgttata----gctatgatatgatttgaacaaaggagggtgt-ggtgtctcattatatacatgtaaaaaagctggtt |
204 |
Q |
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| T |
31160854 |
tatgcttgtgttaattgttatagctagctatgatatgatttgaacaaacgagggtgtgggtgtctcattatatacatgtacaaaagctggtt |
31160763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 31220900 - 31220726
Alignment:
| Q |
22 |
tgatgagaagagctagaagtggttttaaagtgaattattgctaagaataaaacaacattaataacatagttgtttaatgaggatgccataattaactatg |
121 |
Q |
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| T |
31220900 |
tgatgagaagagctagaagtggttttgaattgaattatggctaagaataaaacaacattaataacatagttgtgtaatgaggatgccatattttactata |
31220801 |
T |
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| Q |
122 |
cttgtgttaattgttatagctatgatatgatttgaacaaaggagggtgtggtgtctcattatatacatgtaaaaaag |
198 |
Q |
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| T |
31220800 |
tgctttttaattgttatagctatgatatgatttgaacaaaggagg--gtggtgtctcattatatacatgtacaaaag |
31220726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 31160658 - 31160591
Alignment:
| Q |
280 |
agtggaagaccctaggaagacttttttgttcacattaaatatgtgatatgaaaaccaaccgtctctgc |
347 |
Q |
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| T |
31160658 |
agtggaagaccctaggaagacttttttgttcacattaaatatgtgatatgaaaaccaaccgtctctgc |
31160591 |
T |
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