View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_17 (Length: 347)
Name: NF11644_low_17
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 43619849 - 43619551
Alignment:
| Q |
12 |
cacagaacagaacgagatcacgaaaatgcaaatccaaatcgtgtcagatttccgatctcagcaataaacggaccttcgattcgacgatttcacaaaggnn |
111 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43619849 |
cacagaacagaacgagatcacgaaaatccaaatccaattcgtgtcagatttccgatcttagcaataaacggaccttcgattcgacgatttcacaaaggaa |
43619750 |
T |
|
| Q |
112 |
nnnnn----gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcggaaaagaaa |
207 |
Q |
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| T |
43619749 |
aaaaaaaacgctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcgggaaagaaa |
43619650 |
T |
|
| Q |
208 |
attggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttca |
307 |
Q |
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| T |
43619649 |
attggcaattgatgaaaaatagaggagaagaatgaatgaaaagaaattaca-aagagggaaaggaattttctgagaagagagatgaaaagtatggattca |
43619551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 43619960 - 43619904
Alignment:
| Q |
207 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaaga |
263 |
Q |
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| T |
43619960 |
aattgacaattgatgaaaaatagaggagaaaaatggaggaaaagaaattacagaaga |
43619904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 34080503 - 34080199
Alignment:
| Q |
12 |
cacagaacagaacgagatcacgaaaatgcaaatccaaatcgtgtcagatttccgatctcagcaataaacggaccttcgattcgacgatttcac-aaaggn |
110 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
34080503 |
cacagaactgaacgagatcacgaaaattcaaatccaaatcgtgtcagatttccgatctcagcaataaacagaccttcgattcgacgatttcaccaaagga |
34080404 |
T |
|
| Q |
111 |
nnnnnn----gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcggaaaagaa |
206 |
Q |
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| T |
34080403 |
aaaaaaaaacggtttctcaagagcttcgttgt--gtggaccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcgggaaagaa |
34080306 |
T |
|
| Q |
207 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
306 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
34080305 |
aattggcaattgatgaaaaatagatgagaagaatggatgaaaagaaattacagaagagggaaaggaattttctgagaagagagatgaaaagtatgggttc |
34080206 |
T |
|
| Q |
307 |
agtatag |
313 |
Q |
| |
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||||||| |
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| T |
34080205 |
agtatag |
34080199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 34080600 - 34080506
Alignment:
| Q |
207 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatg |
301 |
Q |
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||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||| |
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| T |
34080600 |
aattgacaattgatgaaaaatagaggagaagaatggaggaaaagaaattacagaagaagaaaatgaactttctgagaagagagatgaaaagtatg |
34080506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 313
Target Start/End: Complemental strand, 16359927 - 16359821
Alignment:
| Q |
207 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |
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| T |
16359927 |
aattggcaattgatgaaaaatagaggagaagaatggatgaaaagaaactacagaagagggaaaggaattttctgagaagaaagatgaaaagtgtgggttc |
16359828 |
T |
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| Q |
307 |
agtatag |
313 |
Q |
| |
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||||||| |
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| T |
16359827 |
agtatag |
16359821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 16362384 - 16362490
Alignment:
| Q |
207 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
306 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
16362384 |
aattgacaattgatgaaaaatagaggagaagaatggatgaaaagaaactacagaagagggaaaggaattttctgagaagagagatgaaaagtatgggttc |
16362483 |
T |
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| Q |
307 |
agtatag |
313 |
Q |
| |
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| ||||| |
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| T |
16362484 |
aatatag |
16362490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 26374683 - 26374605
Alignment:
| Q |
117 |
gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaa |
195 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| || || || ||||| |||||||||| || ||||| |||| |
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| T |
26374683 |
gctttctcgagagcttcgttgtcggtggcccatgcaagacctccgacgaagcaccggtattcaacatcagccattgaaa |
26374605 |
T |
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