View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11644_low_18 (Length: 346)
Name: NF11644_low_18
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 39803698 - 39803383
Alignment:
| Q |
19 |
ataggggacccaagtttgtccctcaatatctctctaatgtgcttttcaaacttcnnnnnnnnnnnncttccacttttgcagtgagtatatatgccataaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39803698 |
ataggggacccaagtttgtccctcaatatctctctaatgtgcttttcaaacttctttttattttttcttccacttttgcagtgagtatatatgccataaa |
39803599 |
T |
|
| Q |
119 |
aagaagagaaaggcacaagaatgaaagaggtagtgtttggttgttttatttgtttatttttgtctctcctttgtcattgtataaaccatgaaaccaagtt |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39803598 |
aagaagagaaaggcacaggaatgaaagaggtagtgtttggttgttttatttgtttatttttgtctctcc--tgtcattgtataaaccatgaaaccaagtt |
39803501 |
T |
|
| Q |
219 |
tgnnnnnnngttggaaaactccctatctattttgtcccnnnnnnnccttcttttgaacaatgccaagaccaagtagctgacaaaatgacgaagctaacac |
318 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39803500 |
tgaaaaaaaggtggaaaactccctatctattttgtccctttttttccttcttttgaacaatgccaagaccaagtagctgacaaaatgacgaagctaacac |
39803401 |
T |
|
| Q |
319 |
gtcaaatgtggacctatg |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39803400 |
gtcaaatgtggacctatg |
39803383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University