View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_19 (Length: 322)
Name: NF11644_low_19
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 6288062 - 6288260
Alignment:
| Q |
17 |
atttggaagtcccaaatccaaaatcttcaaaatacttgtcttgtattggaaatttggattcacgagtaaacatggacattctcaagcgtgaagacaacaa |
116 |
Q |
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| T |
6288062 |
atttggaagtaccaaatccaaaatcttcaaaatacttgtcttgtattggaaatttggattcacgagtaaacatggacattctcaagcgtgaagacaacaa |
6288161 |
T |
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| Q |
117 |
atactatgtttctctagctatgatggcttcaaaagcagtctatgagaatgaagctttccttaaatatactatcaaatatgactggaaggtacaaaatta |
215 |
Q |
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| T |
6288162 |
atactatgtttctctagctatgatggcttcaaaagcagtctatgagaatgaagctttccttaaatatactatcaaatatgactggaaggtacaaaatta |
6288260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 6288247 - 6288321
Alignment:
| Q |
237 |
aaggtacaaaattaacttatttgttgagttttattgtatcatttttatcttctatgttcatttagttagtttctt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6288247 |
aaggtacaaaattaacttatttgttgagttttattggatcatttttatcttctatgttcatttagttagtttctt |
6288321 |
T |
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