View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_2 (Length: 559)
Name: NF11644_low_2
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 29 - 541
Target Start/End: Complemental strand, 2447260 - 2446749
Alignment:
| Q |
29 |
aaatgacaattaaatgtaatcacatgtgtcagttctttggagctttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatactctcct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447260 |
aaatgacaattaaatgtaatcacatgtgtcagttctttggagctttctattaatcaagcttaaggtttacaaagtacaacttatgtttaaatactctcct |
2447161 |
T |
|
| Q |
129 |
cgctcgagccacctggcccgctattcagtaaactgagccatatatatccgacaaaagcaaagtccaagctttccagcagaaatcatacttgagttgatca |
228 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
2447160 |
cgctcgagccacctggcccgctattcagtaaactgagccatatatatccgacaaaagcaaactccaagctttccagcataaatcatacttgagttgatca |
2447061 |
T |
|
| Q |
229 |
gtcatcttatgccaagttatatatcaataaactaaccccattcagattcaatcaatgattaaattaagaaacatatttgtcataccataagactccaatt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2447060 |
gtcatcttatgccaagttatatatcaataaactaaccccattcagattcaatcaatgattaaattatgaaacatatttgtcataccataagactccaatt |
2446961 |
T |
|
| Q |
329 |
aaatttccttaattccatgataaattgtgttacttacacaatcaaggattaaattaaactactataaaattaagttcttgtnnnnnnncacacacacgca |
428 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2446960 |
aaatttccttaattccatgataaattgtgttacttacacaatcaaggattaaattaaactactataaaattaagttcttgtaaaaaaa-acacacacgca |
2446862 |
T |
|
| Q |
429 |
gacacatggtatataagtacaaattatgaaatcgtgaaaatctaaagattcaataaatttgcataggaaccaaatccttgtgtatcatttgtcggtgtga |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2446861 |
gacacatggtatataagtacaaattatgaaatcgtgaaaatctaaagattcaataaatttgcataggaaccaaatccttgtatatcatttgtcggtgtga |
2446762 |
T |
|
| Q |
529 |
accttgtaattac |
541 |
Q |
| |
|
||||||||||||| |
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|
| T |
2446761 |
accttgtaattac |
2446749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 24764861 - 24764831
Alignment:
| Q |
29 |
aaatgacaattaaatgtaatcacatgtgtca |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24764861 |
aaatgacaattaaatgtaatcacatgtgtca |
24764831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 34778422 - 34778390
Alignment:
| Q |
29 |
aaatgacaattaaatgtaatcacatgtgtcagt |
61 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
34778422 |
aaatgacaattaagtgtaatcacatgtgtcagt |
34778390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 24547037 - 24547089
Alignment:
| Q |
71 |
ctttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatact |
123 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||||||||| |||||||||||| |
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|
| T |
24547037 |
ctttctattaatcaagcttagggtttataaagtacaacttgtgtttaaatact |
24547089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 34372464 - 34372514
Alignment:
| Q |
73 |
ttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatact |
123 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||| | |||||||||| |
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|
| T |
34372464 |
ttctattattcaagcttagggtttacaaagtacaacttgtatttaaatact |
34372514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 13855024 - 13855076
Alignment:
| Q |
71 |
ctttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatact |
123 |
Q |
| |
|
|||||||| ||||||||||| || |||| | ||||||||||||||||||||| |
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|
| T |
13855024 |
ctttctattaatcaagcttagggcatacagattacaacttatgtttaaatact |
13855076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 38779515 - 38779463
Alignment:
| Q |
71 |
ctttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatact |
123 |
Q |
| |
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|||||||| | ||||||||| ||||| || |||||||||| |||||||||||| |
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| T |
38779515 |
ctttctattactcaagcttagggtttgcatagtacaacttgtgtttaaatact |
38779463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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