View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_21 (Length: 307)
Name: NF11644_low_21
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 9161898 - 9161623
Alignment:
| Q |
21 |
aaaagagattcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttgnnnnnnngcatgc |
120 |
Q |
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| T |
9161898 |
aaaagagattcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttgaaaaaaagcatgc |
9161799 |
T |
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| Q |
121 |
agtttctacccctatacccacagtctctaatagtgcaaacctcctcgctttaagaagcataagaactgctcagagtcatggaatcatttcacaatagaca |
220 |
Q |
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| T |
9161798 |
agtttctacccctatacccacagtctctaatagtgcaaacctcctcgctttaagaagcataagaactgctcagagtcatggaatcatttcacaatagaca |
9161699 |
T |
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| Q |
221 |
tagaaaagaaatctgcatgcaactattgtgatggaaaatgaagtatgataatgcaactaattctatgtgtgttcat |
296 |
Q |
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| T |
9161698 |
tagaaaagaaatctgcatgcaactattgtgatggaaaatgaagtatgataatgcaactagttctatgtgtgttcat |
9161623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 9149078 - 9149001
Alignment:
| Q |
29 |
ttcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttg |
107 |
Q |
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| T |
9149078 |
ttcagagtgttgtattagacacggagatggtgttacactaatcca-ttgcatagacaacttataccagttaattccttg |
9149001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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