View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_22 (Length: 289)
Name: NF11644_low_22
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 22840012 - 22839901
Alignment:
| Q |
11 |
caaagggccatacacacacacatcatcatcatatagtacaatacaagagtcgtgagctttcttctaagaataataacaaaaaactcttcacaaattttcc |
110 |
Q |
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| T |
22840012 |
caaagggccatacatacacacatcatcatcatatagtacaatacaagagtcgtgagctttcttctaagaataataacaaaaaactcttcacaaattttcc |
22839913 |
T |
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| Q |
111 |
ttcaagtagatg |
122 |
Q |
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|||||||||||| |
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| T |
22839912 |
ttcaagtagatg |
22839901 |
T |
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Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 22839847 - 22839749
Alignment:
| Q |
176 |
gtaggtagggacgttgtagggagataggctcgtgtaatgctctgccttgttaggttagagttcatcacatgcacatatttttcatcaacaatgatatat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22839847 |
gtaggtagggacgttgtagggagataggctcgtgtaatgctctgccttgttaggttagagttcatcacatgcacatatttttcatcaacaatgatatat |
22839749 |
T |
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