View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_23 (Length: 283)
Name: NF11644_low_23
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 32488533 - 32488799
Alignment:
| Q |
1 |
caacgaaagtataacaaacaattaggcgcataaatctaccttcatgtaccgcccagcttgcctcataagccaaacaggaggtctttccacatctaatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32488533 |
caacgaaagtataacaaacaattaggcgcataaatctaccttcatgtacctcccagcttgcctcataagccaaacaggaggtctttcgacatctaatcca |
32488632 |
T |
|
| Q |
101 |
cgaactgcattgagcaaaagaggttctgtggcattatttgttttaggttcagcaacagctcctacacataatttcccaaaattcagataatggaccagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32488633 |
cgaactgcattgagcaaaagaggttctgtggcattatttgttttaggttcagcaacagctcctacacataatttcccaaaattcagataatgggccagat |
32488732 |
T |
|
| Q |
201 |
taaatttttnnnnnnnnggtttttagtgaaattgaacaataaatgttaatgatagaagattcaaaac |
267 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32488733 |
taaattttttaaaaaaaggtttttagtgaaattgaacaataaaagttaatgatagaagattcaaaac |
32488799 |
T |
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