View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_25 (Length: 278)
Name: NF11644_low_25
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 40046013 - 40045767
Alignment:
| Q |
16 |
gcacatgagtggtatttagggtgtataaattgttaaatttgtacaccatgcacaagttagagaaaattacttttaaccactagattaaagaggaacattt |
115 |
Q |
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| T |
40046013 |
gcacatgagtggtatttagagtgcacaaattgttaaatttatgcactatgcacaagttagagaaaattacttttagccactagattaaagaggaacattt |
40045914 |
T |
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| Q |
116 |
acttcatcttcaaccttcccaccccttgnnnnnnnnnnnnaacataaattattaaaagctagcaaacctcaaggcaaactggaaacccaacaataagaat |
215 |
Q |
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| T |
40045913 |
acttcatcttcaaccttcctatcccttgttttttgtttttaacataaattattaaaagctagcaaacctcaaggcaaactggaaacccaacaacaagaat |
40045814 |
T |
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| Q |
216 |
acaagcaaacaaccacacaaa-aaacaacccttaaaaatcctctttc |
261 |
Q |
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| T |
40045813 |
acaagcaaacaaccacacaaagaaacaacccttaaaaatcctctttc |
40045767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 11768770 - 11768877
Alignment:
| Q |
156 |
aacataaattattaaaagctagcaaacctcaaggcaaactggaaacccaacaataagaatacaagcaaacaaccacacaaa-aaacaacccttaaaaatc |
254 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
11768770 |
aacagaaattattaaaaactagcaaacctcaaggcaaactggaaacccaacaacaagaatacaagcaaacagccacacaaagaaacaacccttaaaaatc |
11768869 |
T |
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| Q |
255 |
ctctttca |
262 |
Q |
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|||||||| |
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| T |
11768870 |
ctctttca |
11768877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 11768604 - 11768694
Alignment:
| Q |
24 |
gtggtatttagggtgtataaattgttaaatttgtacaccatgcacaagttagagaaaattacttttaaccactagattaaagaggaacatt |
114 |
Q |
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| T |
11768604 |
gtggcatttagggtgcacaaattgttaaatttgtgcaccatgcacaagttagagaaaattacttttagccactagattaaagagaaacatt |
11768694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 41707452 - 41707386
Alignment:
| Q |
48 |
ttaaatttgtacaccatgcacaagttagagaaaattacttttaaccactagattaaagaggaacatt |
114 |
Q |
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| T |
41707452 |
ttaaatttgtgcaccatacacaagttagagaaaattatttttaaccatttgatttaagaggaacatt |
41707386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 44309476 - 44309410
Alignment:
| Q |
48 |
ttaaatttgtacaccatgcacaagttagagaaaattacttttaaccactagattaaagaggaacatt |
114 |
Q |
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| T |
44309476 |
ttaaatttgtgcaccatacacaagttagaggaaataaatgttaaccattagattagagaggaccatt |
44309410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 8673685 - 8673751
Alignment:
| Q |
48 |
ttaaatttgtacaccatgcacaagttagagaaaattacttttaaccactagattaaagaggaacatt |
114 |
Q |
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|||||||||| |||||| |||||||||||| |||| | | ||||||| ||||||| |||||| |||| |
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| T |
8673685 |
ttaaatttgtgcaccatacacaagttagaggaaataaatgttaaccattagattagagaggaccatt |
8673751 |
T |
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