View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_27 (Length: 250)
Name: NF11644_low_27
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 9161889 - 9161998
Alignment:
| Q |
1 |
aatctcttttgtcgagaatggcaaactcataaatggtcaacaactcaccataattgataccaaactcatcatggcatcttccaacacaatcaatcactgg |
100 |
Q |
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| T |
9161889 |
aatctcttttgtcgagaatggcaaactca--aatggtcaacaactcaccataattgataccaaactcatcatggcatcttccaacacaatcaatcactgg |
9161986 |
T |
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| Q |
101 |
gtattacatatt |
112 |
Q |
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| T |
9161987 |
gtattacatatt |
9161998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 234
Target Start/End: Original strand, 9149229 - 9149387
Alignment:
| Q |
76 |
atcttccaacacaatcaatcactgggtattacatatttacttctctcttaggactacatagatggaaccattagttatctttttcttggagattgtcctc |
175 |
Q |
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| T |
9149229 |
atcttccaacacaatcaattactggagattgcaaagttacttctctctcaggataacataactggatccattggttttctgtatcttagagattctcttc |
9149328 |
T |
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| Q |
176 |
aggatattaccaaaagctttcttatcctgcacataacagaaaagcacgtgcgatgttca |
234 |
Q |
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| T |
9149329 |
aggatattagcaaaagcttccttatcctgcacataacaaacaagcacgtgcaatgttca |
9149387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 9161994 - 9162049
Alignment:
| Q |
179 |
atattaccaaaagctttcttatcctgcacataacagaaaagcacgtgcgatgttca |
234 |
Q |
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| T |
9161994 |
atattaccaaaagctttcttatcctgcacataacagaaaagcacgtgcgatgttca |
9162049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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