View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_28 (Length: 241)
Name: NF11644_low_28
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6917864 - 6917634
Alignment:
| Q |
1 |
ttttaagcatttgggtaaaatatgttgcaggatttgcctagatttcaacctgagaacctgcaacagaatcagaccacttttgacaaagttaatgaactgg |
100 |
Q |
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| T |
6917864 |
ttttaagcatgttggtaaaatatgttgcaggatttgcctagatttcaacctgagaacctgcaacagaatcagaccatttttgacaaagttaatgaactgg |
6917765 |
T |
|
| Q |
101 |
ccacaaagaagggatgtactccatcccagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917764 |
ccacaaagaagggatgtactccatcccagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaa |
6917665 |
T |
|
| Q |
201 |
ctttaatcaaaacatcggtgctctatctgtg |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6917664 |
ctttaatcaaaacatcggtgctctatctgtg |
6917634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 6960253 - 6960450
Alignment:
| Q |
18 |
aaatatgttgcaggatttgcctagatttcaacctgagaacctgcaacagaatcagaccacttttgacaaagttaatgaactggccacaaagaagggatgt |
117 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| | ||||| || |||||||||||||| ||||||||||||| |
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| T |
6960253 |
aaatatgttgcagcatttgcctagatttcaacctgaaaacctgcagcagaatcagactatatttgataaggttaatgaactggctgtaaagaagggatgt |
6960352 |
T |
|
| Q |
118 |
actccatcccagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaactttaatcaaaacat |
215 |
Q |
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| T |
6960353 |
actccatctcagcttgcactagcctggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaactttaatcaaaacat |
6960450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 6920563 - 6920350
Alignment:
| Q |
18 |
aaatatgttgcaggatttgcctagatttcaacctgagaacctgcaacagaatcagaccacttttgacaaagttaatgaactggccacaaagaagggatgt |
117 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| |||| |||||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||||||| |
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| T |
6920563 |
aaatttgttgcagcatttgcctcgatttcaaactgaaaacctgcagcagaatcagactatatttgacaaagttaatgaattggctacaaagaagggatgt |
6920464 |
T |
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| Q |
118 |
actccatcccagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaactttaatcaaaacatcg |
217 |
Q |
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|||||| | ||||||||| | || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6920463 |
actccacctcagcttgcactagcctggcttcatcaccaaggaaatgatgtgtgcccaatacctggaaccaccaaaattgagaacttgaatcaaaacatcg |
6920364 |
T |
|
| Q |
218 |
gtgctctatctgtg |
231 |
Q |
| |
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|||||||||||||| |
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| T |
6920363 |
gtgctctatctgtg |
6920350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 6957649 - 6957862
Alignment:
| Q |
18 |
aaatatgttgcaggatttgcctagatttcaacctgagaacctgcaacagaatcagaccacttttgacaaagttaatgaactggccacaaagaagggatgt |
117 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| |||| |||||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||||||| |
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| T |
6957649 |
aaatttgttgcagcatttgcctcgatttcaaactgaaaacctgcagcagaatcagactatatttgacaaagttaatgaattggctacaaagaagggatgt |
6957748 |
T |
|
| Q |
118 |
actccatcccagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaactttaatcaaaacatcg |
217 |
Q |
| |
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|||||| | ||||||||| | || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6957749 |
actccacctcagcttgcactagcctggcttcatcaccaaggaaatgatgtgtgcccaatacctggaaccaccaaaattgagaacttgaatcaaaacatcg |
6957848 |
T |
|
| Q |
218 |
gtgctctatctgtg |
231 |
Q |
| |
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|||||||||||||| |
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| T |
6957849 |
gtgctctatctgtg |
6957862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 6968175 - 6967971
Alignment:
| Q |
26 |
tgcaggatttgcctagatttcaacctgagaacctgcaacagaatcagaccacttttgacaaagttaatgaactggccacaaagaagggatgtactccatc |
125 |
Q |
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||||| || |||| |||||||||||||| |||||||| || |||||||| | ||||| | |||||||||||||| | |||||||||||||||||||| |
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| T |
6968175 |
tgcagtatatgccgagatttcaacctgaaaacctgcagcaaaatcagactatatttgagagggttaatgaactggctgctaagaagggatgtactccatc |
6968076 |
T |
|
| Q |
126 |
ccagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaattgagaactttaatcaaaacatcggtgctcta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |
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| T |
6968075 |
tcagcttgcattggcatggcttcatcaccaaggaaacgacgtgtgcccgatacctggaaccaccaaaatagagaactttaatcaaaacattggtgcttta |
6967976 |
T |
|
| Q |
226 |
tctgt |
230 |
Q |
| |
|
||||| |
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|
| T |
6967975 |
tctgt |
6967971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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