View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_29 (Length: 238)
Name: NF11644_low_29
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6917851 - 6917927
Alignment:
| Q |
1 |
caacatgcttaaaagacagaatatggcaacttccctaatttatatagataataagatacaagacacacaaatacata |
77 |
Q |
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| T |
6917851 |
caacatgcttaaaagacagaatatggcaacttccctaatttatatagataataagatacaagacacacaaatacata |
6917927 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 6959567 - 6959487
Alignment:
| Q |
126 |
tcattgatgtatgagattaaaggaccctcaaataatccatggttgtggatcactgctaggtgagttgattaacaaaatgaa |
206 |
Q |
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| T |
6959567 |
tcattgatgtatgagattaaaggaccctcaaataatccatggttgcgaatcactgttaggtgagttgattaacaaaatgaa |
6959487 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 39466921 - 39466950
Alignment:
| Q |
73 |
acatagtgcagtttgatcatattaaattct |
102 |
Q |
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| T |
39466921 |
acatagtgcagtttgatcatattaaattct |
39466950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 12198004 - 12197975
Alignment:
| Q |
73 |
acatagtgcagtttgatcatattaaattct |
102 |
Q |
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| T |
12198004 |
acatagtgcagtttgatcatattaaattct |
12197975 |
T |
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