View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_3 (Length: 540)
Name: NF11644_low_3
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 954220 - 954676
Alignment:
| Q |
19 |
ggtagagtagttgattaaatcacgacaacataattctaccgaactcacttcgatctaaatatgcacttagaacatcttcaatgaaggtatccaagtgatt |
118 |
Q |
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| T |
954220 |
ggtagagtagttgattaaatcacgacaacataattctattgaactcacttcgatccaaatatgcacttagaacatctccaatgaagatatccaagtgatt |
954319 |
T |
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| Q |
119 |
tc---------atgaactcattcacgannnnnnnnnnnnnattggaggaattttttgtgtcaaagtaggtaacataaaaattgtagaagaaacttaaata |
209 |
Q |
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| T |
954320 |
tctatagaagaatgaactcattcacgattttttcttttttattggaggaattttttgtgtcaaagtaggtaacataaaaattgtagaagaaacttaaata |
954419 |
T |
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| Q |
210 |
aagtatgatatcaacatcaatgtttagttgcataatataatattctatcataattgcttatttgtgtgtggtatcctatcatcattaatataaggtacct |
309 |
Q |
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| T |
954420 |
aagtatgatatcaacatcaatgtttagttgcataatataatattctatcataattgcttatttgtgtgtggtatcctatcatcattaatataaggtacct |
954519 |
T |
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| Q |
310 |
tgtttattttaccataagagcaaaatgtgtatgagttgtatgatggagcgttgtatgaaccgtttattagtagtttatgaaactcttttaattaataatt |
409 |
Q |
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| T |
954520 |
tgtttattttaccataagagcaaaatgtgtatgagttgtatgatggagcgttgtatgaaccgtttattagtagtttatgaaactcttttaattaataatt |
954619 |
T |
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| Q |
410 |
taaggctctctcactcactcactcacattgcaacagtgaccaaaaaaccatagaccttcat |
470 |
Q |
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| T |
954620 |
taaggctct----ctcactcactcacattgcaacagtgaccaaaaaaccatagaccttcat |
954676 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 954740 - 954804
Alignment:
| Q |
466 |
ttcatgagctccccactatatatgtttctaaatagcatgcacaaacaaaagttgaatcggttctt |
530 |
Q |
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| T |
954740 |
ttcatgacctccccactatatatgtttctaaatagcatgcacaaacaaaagttgaatcggttctt |
954804 |
T |
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