View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_low_4 (Length: 519)

Name: NF11644_low_4
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_low_4
NF11644_low_4
[»] chr1 (6 HSPs)
chr1 (13-317)||(18439514-18439818)
chr1 (13-317)||(18450372-18450676)
chr1 (384-500)||(18439331-18439447)
chr1 (384-500)||(18450189-18450305)
chr1 (143-256)||(18104176-18104289)
chr1 (158-260)||(42577044-42577146)
[»] chr5 (3 HSPs)
chr5 (158-260)||(113943-114045)
chr5 (162-260)||(23689211-23689309)
chr5 (160-205)||(23354945-23354990)
[»] chr2 (2 HSPs)
chr2 (158-256)||(4823793-4823892)
chr2 (158-204)||(23769131-23769177)
[»] chr3 (4 HSPs)
chr3 (158-260)||(21412389-21412492)
chr3 (158-260)||(1884154-1884256)
chr3 (158-213)||(20623070-20623125)
chr3 (92-124)||(45850758-45850790)
[»] chr7 (3 HSPs)
chr7 (158-260)||(23024104-23024206)
chr7 (158-212)||(4093948-4094002)
chr7 (158-243)||(4288582-4288667)
[»] chr8 (3 HSPs)
chr8 (145-260)||(5527815-5527931)
chr8 (158-260)||(24750448-24750550)
chr8 (175-213)||(23412989-23413027)
[»] chr4 (1 HSPs)
chr4 (92-136)||(2183363-2183407)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 18439818 - 18439514
Alignment:
Q  13 gcagagaatatgtagaagagtgatatgatgtgggttttgtttttggttgagaagataggcgtgttgtttctctaatcccatcaggttgctaacccacaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18439818 gcagagaatatgtagaagagtgatatgatgtgggttttgtttttggttgagaagataggcgtgttgtttctctaatcccatcaggttgctaacccacaaa 18439719  T
Q  113 aaatcaaggatacagataacaaagtatgtaagtgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactagaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18439718 aaatcaaggatacagataacaaagtatgtaagtgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcaggatcaaactagaaa 18439619  T
Q  213 ttttaggacgtatttgtgcaattatttctcataaaagtttgaatgttctgttcaaaaatttaaatacgaaaaagaagaatataattgtctccttcaacat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  18439618 ttttaggacgtatttgtgcaattatttctcataaaagtttgaatgttctgttcaaaaatttaaatacaaaaaagaagaatataattgtctccttcaacaa 18439519  T
Q  313 agttg 317  Q
    |||||    
T  18439518 agttg 18439514  T

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Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 18450676 - 18450372
Alignment:
Q  13 gcagagaatatgtagaagagtgatatgatgtgggttttgtttttggttgagaagataggcgtgttgtttctctaatcccatcaggttgctaacccacaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18450676 gcagagaatatgtagaagagtgatatgatgtgggttttgtttttggttgagaagataggcgtgttgtttctctaatcccatcaggttgctaacccacaaa 18450577  T
Q  113 aaatcaaggatacagataacaaagtatgtaagtgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactagaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18450576 aaatcaaggatacagataacaaagtatgtaagtgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcaggatcaaactagaaa 18450477  T
Q  213 ttttaggacgtatttgtgcaattatttctcataaaagtttgaatgttctgttcaaaaatttaaatacgaaaaagaagaatataattgtctccttcaacat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  18450476 ttttaggacgtatttgtgcaattatttctcataaaagtttgaatgttctgttcaaaaatttaaatacaaaaaagaagaatataattgtctccttcaacaa 18450377  T
Q  313 agttg 317  Q
    |||||    
T  18450376 agttg 18450372  T

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Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 384 - 500
Target Start/End: Complemental strand, 18439447 - 18439331
Alignment:
Q  384 catttttatagcataaataaagattgatacatcaaatcatatataaattctcttgttactcttttctcgttttaacttgaatatttttagctagaggatt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18439447 catttttatagcataaataaagattgatacatcaaatcatatacacattctcttgttactcttttctcgttttaacttgaatatttttagctagaggatt 18439348  T
Q  484 atgtatactgatttgtg 500  Q
    ||||||  |||||||||    
T  18439347 atgtattttgatttgtg 18439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 384 - 500
Target Start/End: Complemental strand, 18450305 - 18450189
Alignment:
Q  384 catttttatagcataaataaagattgatacatcaaatcatatataaattctcttgttactcttttctcgttttaacttgaatatttttagctagaggatt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18450305 catttttatagcataaataaagattgatacatcaaatcatatacacattctcttgttactcttttctcgttttaacttgaatatttttagctagaggatt 18450206  T
Q  484 atgtatactgatttgtg 500  Q
    ||||||  |||||||||    
T  18450205 atgtattttgatttgtg 18450189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 18104289 - 18104176
Alignment:
Q  143 agtgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaacta-gaaattttaggacgtatttgtgcaattatttct 241  Q
    ||||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||||  |||||| || |||||||| | |||||    
T  18104289 agtgtttacgtgtgtttttggtaaacaatcactagttttaaatttattacttgcatgatcaaactattaaatcgtaggacataattgtgcaa-tgtttct 18104191  T
Q  242 cataaaagtttgaat 256  Q
    || ||||||||||||    
T  18104190 cagaaaagtttgaat 18104176  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 42577146 - 42577044
Alignment:
Q  158 ttttggtaaacaatcattagtttt-aaattaattgcttgcatgatcaaactagaaattttaggacgtatttgtgcaattatttctcataaaagtttgaat 256  Q
    |||||||||||||||||||||||| |||||  || |||||||||||||||||| || | |||||| ||||| ||||| ||||||| ||||| |||| |||    
T  42577146 ttttggtaaacaatcattagttttaaaatttgttacttgcatgatcaaactagtaaatctaggacatatttatgcaa-tatttcttataaatgtttaaat 42577048  T
Q  257 gttc 260  Q
    ||||    
T  42577047 gttc 42577044  T

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Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 114045 - 113943
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactagaaattttaggacgtatttgtgcaattatttctcataaaagtttgaatg 257  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || ||||  || ||| ||||||||||||  ||||||| |||||||||||||    
T  114045 ttttggtaaacaatcactagttttagattaattgcttgcatgatcaaattaaaaatcataagacatatttgtgcaatagtttctcaaaaaagtttgaatg 113946  T
Q  258 ttc 260  Q
    |||    
T  113945 ttc 113943  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 23689211 - 23689309
Alignment:
Q  162 ggtaaacaatcattagttttaaattaattgcttgcatgatcaaactagaaattttaggacgtatttgtgcaattatttctcataaaagtttgaatgttc 260  Q
    |||||||||| | ||| ||||||||||||| | ||||| ||||||| |||||  || ||  ||||||||||||  ||| ||| ||||||||||||||||    
T  23689211 ggtaaacaattactaggtttaaattaattgttggcatgttcaaacttgaaatcctatgatatatttgtgcaatagtttatcagaaaagtttgaatgttc 23689309  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 23354945 - 23354990
Alignment:
Q  160 ttggtaaacaatcattagttttaaattaattgcttgcatgatcaaa 205  Q
    ||||||||||| | |||||||||||||| ||||||||| |||||||    
T  23354945 ttggtaaacaagcgttagttttaaattacttgcttgcaagatcaaa 23354990  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 4823892 - 4823793
Alignment:
Q  158 ttttggtaaacaatcattagtttt--aaattaattgcttgcatgatcaaactagaaattttaggacgtatttgtgcaattatttctcataaaagtttgaa 255  Q
    |||||||||||||||| || ||||  | |||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| | |||||||||||    
T  4823892 ttttggtaaacaatcactaattttttagattaattgtttgcatgatcaa-ctagaaattttaggacatatttatgcaattatttcttaaaaaagtttgaa 4823794  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 23769131 - 23769177
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaa 204  Q
    |||||||||||||||||| |||| ||||||||| |||||| ||||||    
T  23769131 ttttggtaaacaatcattggtttaaaattaattacttgcaagatcaa 23769177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 21412389 - 21412492
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactag-aaattttaggacgtatttgtgcaattatttctcataaaa-gtttgaa 255  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||||||  ||| ||||||| ||||||||||| ||||||| | |||| |||||||    
T  21412389 ttttggtaaacaattactagttttaaattaattacttgcatgatcaaactagtgaatattaggacatatttgtgcaa-tatttcttaaaaaatgtttgaa 21412487  T
Q  256 tgttc 260  Q
    |||||    
T  21412488 tgttc 21412492  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 1884154 - 1884256
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactag-aaattttaggacgtatttgtgcaattatttctcataaaagtttgaat 256  Q
    |||||||||||||||| ||||||| ||||  || ||||||  |||||||||| ||||  |||||| ||||||||||| ||||||||| ||| ||||||||    
T  1884154 ttttggtaaacaatcactagttttcaatttgttacttgcagtatcaaactagtaaatcataggacatatttgtgcaa-tatttctcaaaaatgtttgaat 1884252  T
Q  257 gttc 260  Q
    ||||    
T  1884253 gttc 1884256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 20623070 - 20623125
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactagaaat 213  Q
    ||||||||||||| |||||||||||||||||||| ||| | |||||||||| ||||    
T  20623070 ttttggtaaacaaacattagttttaaattaattgtttgtaggatcaaactaaaaat 20623125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 45850758 - 45850790
Alignment:
Q  92 atcaggttgctaacccacaaaaaatcaaggata 124  Q
    |||||||||||||||||| ||||||||||||||    
T  45850758 atcaggttgctaacccaccaaaaatcaaggata 45850790  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 23024206 - 23024104
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactag-aaattttaggacgtatttgtgcaattatttctcataaaagtttgaat 256  Q
    ||||||||| |||||| |||||||||||| ||| | ||| |||||||||||| ||||  |||||| ||||||||||| ||||||| | ||| ||||||||    
T  23024206 ttttggtaagcaatcactagttttaaatttattacgtgcttgatcaaactagtaaatcctaggacatatttgtgcaa-tatttcttagaaatgtttgaat 23024108  T
Q  257 gttc 260  Q
    ||||    
T  23024107 gttc 23024104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 4094002 - 4093948
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactagaaa 212  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  4094002 ttttggtaaacaatcgctagttttgaattaattacttgcatgatcaaactagaaa 4093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 4288667 - 4288582
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactag-aaattttaggacgtatttgtgcaattatttctca 243  Q
    ||||||||||||||||||||||||||||| ||| ||  || ||| ||||||| ||||  || ||| ||||||||||| |||||||||    
T  4288667 ttttggtaaacaatcattagttttaaatttattactcacaggattaaactagtaaatcctatgacatatttgtgcaa-tatttctca 4288582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 5527931 - 5527815
Alignment:
Q  145 tgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaactag-aaattttaggacgtatttgtgcaattatttctca 243  Q
    |||||||  ||| ||||| |||||||||  |||||||||| ||||| |||||| ||||||||||| |||   || ||| ||||||||||||||||  |||    
T  5527931 tgtttaccagtaattttgctaaacaatcgctagttttaaactaattacttgcaagatcaaactagtaaaacctatgacatatttgtgcaattattgttca 5527832  T
Q  244 taaaagtttgaatgttc 260  Q
     ||| ||||||||||||    
T  5527831 aaaatgtttgaatgttc 5527815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 24750550 - 24750448
Alignment:
Q  158 ttttggtaaacaatcattagttttaaattaattgcttgcatgatcaaacta-gaaattttaggacgtatttgtgcaattatttctcataaaagtttgaat 256  Q
    |||||||||||||||| |  ||||||||| ||| ||| || ||||||||||  ||||  || ||| ||||||||||| ||||||||| |||| |||||||    
T  24750550 ttttggtaaacaatcaatttttttaaatttattactttcaagatcaaactactaaatcctatgacatatttgtgcaa-tatttctcagaaaactttgaat 24750452  T
Q  257 gttc 260  Q
    ||||    
T  24750451 gttc 24750448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 23413027 - 23412989
Alignment:
Q  175 tagttttaaattaattgcttgcatgatcaaactagaaat 213  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  23413027 tagttttagattaattgcttgcaggatcaaactagaaat 23412989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 2183407 - 2183363
Alignment:
Q  92 atcaggttgctaacccacaaaaaatcaaggatacagataacaaag 136  Q
    |||||||||||||||||| |||||| ||||||| | |||||||||    
T  2183407 atcaggttgctaacccaccaaaaattaaggataaaaataacaaag 2183363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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