View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11644_low_7 (Length: 469)
Name: NF11644_low_7
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11644_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Original strand, 2621576 - 2622022
Alignment:
| Q |
16 |
agaagcacttcaacgacttacaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttca |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621576 |
agaagcacttcaacgccttacaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttca |
2621675 |
T |
|
| Q |
116 |
gtttcatggggttttgctgttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621676 |
gtttcatggggttttgctgttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctg |
2621775 |
T |
|
| Q |
216 |
attacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621776 |
attacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaat |
2621875 |
T |
|
| Q |
316 |
acaacagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621876 |
acaacagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatat |
2621975 |
T |
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| Q |
416 |
aagaagccagacccgcatctatgggatagagtacgttcttcttctct |
462 |
Q |
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| T |
2621976 |
aagaagccagacccgcatctatgggatagagtacgttcttcttctct |
2622022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 35 - 448
Target Start/End: Complemental strand, 41317052 - 41316639
Alignment:
| Q |
35 |
acaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttcagtttcatggggttttgctg |
134 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||| |
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| T |
41317052 |
acaataccaatgaagcttgactcagcagggctcatgcagcaatccatctgctacgacaaatcaaagcactggactgtttctgtttcatggggttttgctg |
41316953 |
T |
|
| Q |
135 |
ttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcttatgcttt |
234 |
Q |
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|||| |||||||| || | ||||| ||||| || || |||||||||||||| || ||| | |||||||| |||||||| ||||||||||| ||||| || |
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| T |
41316952 |
ttcagatattccgtggcgtgttttcaccccgagagatggaaatgccttcaagaacgttcttgaattggtacagaagagcagattacactgcatatgcatt |
41316853 |
T |
|
| Q |
235 |
caacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaacagacagtgagtgaa |
334 |
Q |
| |
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|||||| ||||| |||| ||| | || ||||||||||||||||| |||||| | ||||| ||||||| |||| ||||| | |||| ||| ||| |||| |
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| T |
41316852 |
caacacgcgtccggttagccgaaatccatgtcagaagccttttgtattttacttctcaaaggcaaaatacaatgatacaacagaacaaacactgactgaa |
41316753 |
T |
|
| Q |
335 |
tatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataagaagccagacccgcatc |
434 |
Q |
| |
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||||||| |||||||||||||| || |||||||| ||||| ||||| ||||||||| || |||||| ||| | ||||||||||||||||| || |||| |
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| T |
41316752 |
tatgaaaggcatcgtgttcctcacccagaatgccggtggaagatggccaatccttcttctgttgacagagtggaggtatataagaagccagatccacatc |
41316653 |
T |
|
| Q |
435 |
tatgggatagagta |
448 |
Q |
| |
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|||||||||||||| |
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|
| T |
41316652 |
tatgggatagagta |
41316639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 22775654 - 22775578
Alignment:
| Q |
194 |
cttaattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaa |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||||||| |
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| T |
22775654 |
cttaattggtatagaagagctgattacactgcttatgcattcaacacaaggcctgtaaccaaacacccttgtcagaa |
22775578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 40944423 - 40944317
Alignment:
| Q |
173 |
gaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagc |
272 |
Q |
| |
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|||||||| ||||| || || || ||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||| || ||| |||||||| |||| |
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| T |
40944423 |
gaaatgccatcaagaacttttctgaattggtatagaagagctgattatactgcatatgcattcaacacaaggcctgttgctaaacatccttgtcaaaagc |
40944324 |
T |
|
| Q |
273 |
cttttgt |
279 |
Q |
| |
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| ||||| |
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|
| T |
40944323 |
cctttgt |
40944317 |
T |
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