View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11644_low_8 (Length: 460)

Name: NF11644_low_8
Description: NF11644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11644_low_8
NF11644_low_8
[»] chr1 (2 HSPs)
chr1 (16-454)||(30870492-30870930)
chr1 (222-266)||(30870454-30870498)
[»] chr4 (3 HSPs)
chr4 (272-407)||(11392763-11392898)
chr4 (272-407)||(11402490-11402625)
chr4 (272-405)||(2436203-2436336)
[»] chr3 (1 HSPs)
chr3 (272-359)||(35478146-35478232)
[»] chr7 (2 HSPs)
chr7 (269-385)||(47256219-47256335)
chr7 (272-355)||(45445455-45445539)
[»] chr5 (1 HSPs)
chr5 (322-400)||(37114482-37114560)
[»] chr6 (1 HSPs)
chr6 (311-359)||(26368538-26368585)


Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 30870930 - 30870492
Alignment:
Q  16 attatattgtattgttatatgggtggatgatacaggccaaaagtgggcatctcataacactggcctttcattgcagcttttatacaccttctcttaatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30870930 attatattgtattgttatatgggtggatgatacaggccaaaagtgggcatctcataacactggcctttcattgcagcttttatacaccttctcttaatat 30870831  T
Q  116 aatcttttaattcataatgattatattcttttcaatatccatcttataagtataaaattgattaatctatgtcataaaacctactagagacataagtgag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  30870830 aatcttttaattcataatgattatattcttttcaatatccatcttataagtataaaattgattaatctatgtcagaaaacctactagacacataagtgag 30870731  T
Q  216 tcgtctttttctcaaattgaattttcttcatatacaagaaacaaagattaagttcctgtttgtttttgcggtgaatacaagcttaaagtgcgttttctct 315  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30870730 tcgtctttttctcaaattgaattttcttcatacacaagaaacaaagattaagttcctgtttgtttttgcggtgaatacaagcttaacgtgcgttttctct 30870631  T
Q  316 aaagctacaaaatgtagcttcttcattttcacgttaaatatgccccaagacgtgagaaatgcaaatctaccgctattccaaacaaccaataaacatataa 415  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30870630 aaagctacaaaatatagcttcttcattttcacgttaaatatgccccaagacgtgagaaatgcaaatctaccgctattccaaacaagcaataaacatataa 30870531  T
Q  416 tctcatgcttaaagtgtttgagtctctcgttcttctctc 454  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  30870530 tctcatgcttaaagtgtttgagtctcttgttcttttctc 30870492  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 30870498 - 30870454
Alignment:
Q  222 ttttctcaaattgaattttcttcatatacaagaaacaaagattaa 266  Q
    ||||||| |||| ||||||||||||| |||||||| |||||||||    
T  30870498 ttttctccaattaaattttcttcatacacaagaaaaaaagattaa 30870454  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 11392898 - 11392763
Alignment:
Q  272 tgtttgtttttgcggtgaatacaagcttaaagtgcgttttctctaaagctacaaaatgtagcttcttcattttcacgttaaatatgccccaagacgtgag 371  Q
    |||||||||||||||||||| ||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||| || || |    |||| ||     
T  11392898 tgtttgtttttgcggtgaatgcaagcttaacgtacattttctgtaaagctacaaaatgtagcttcttcattttcacgttatatctgtcttgggacgcgaa 11392799  T
Q  372 aaatgcaaatctaccgctattccaaacaaccaataa 407  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  11392798 aaatgcaaatccaccgctattccaaacaagcaataa 11392763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 11402625 - 11402490
Alignment:
Q  272 tgtttgtttttgcggtgaatacaagcttaaagtgcgttttctctaaagctacaaaatgtagcttcttcattttcacgttaaatatgccccaagacgtgag 371  Q
    |||||||||||||||||||| ||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||| || || |    |||| ||     
T  11402625 tgtttgtttttgcggtgaatgcaagcttaacgtacattttctgtaaagctacaaaatgtagcttcttcattttcacgttatatctgtcttgggacgcgaa 11402526  T
Q  372 aaatgcaaatctaccgctattccaaacaaccaataa 407  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  11402525 aaatgcaaatccaccgctattccaaacaagcaataa 11402490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 405
Target Start/End: Original strand, 2436203 - 2436336
Alignment:
Q  272 tgtttgtttttgcggtgaatacaagcttaaagtgcgttttctctaaagctacaaaatgtagcttcttcattttcacgttaaatatgccccaagacgtgag 371  Q
    |||||| |||||||||||||||||  |||| ||| |||||||||||| ||||||||||||||||||  ||||||| |||||||||||  |  ||| |||     
T  2436203 tgtttgcttttgcggtgaatacaacattaacgtgtgttttctctaaacctacaaaatgtagcttctatattttcaagttaaatatgcttcgggacatgaa 2436302  T
Q  372 aaatgcaaatctaccgctattccaaacaaccaat 405  Q
    |||||| | |||||||||||||||||||| ||||    
T  2436303 aaatgctagtctaccgctattccaaacaagcaat 2436336  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 359
Target Start/End: Complemental strand, 35478232 - 35478146
Alignment:
Q  272 tgtttgtttttgcggtgaatacaagcttaaagtgcgttttctctaaagctacaaaatgtagcttcttcattttcacgttaaatatgcc 359  Q
    |||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||| | || ||||||||||||||||||||| |||||    
T  35478232 tgtttgtttttgcggtgaatgcaaacttaacgtgtgttttctctaaagctacaaagtata-cttcttcattttcacgttaaacatgcc 35478146  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 47256335 - 47256219
Alignment:
Q  269 tcctgtttgtttttgcggtgaatacaagcttaaagtgcgttttctctaaagctacaaaatgtagcttcttcattttcacgttaaatatgccccaagacgt 368  Q
    ||||||| |||||  | |||||| ||||||||| || ||||||| |||||| ||||||||||| |||||||| |||||| ||||||||||  |  ||||     
T  47256335 tcctgttagttttaactgtgaatgcaagcttaaggtacgttttcactaaagttacaaaatgtaccttcttcaatttcacattaaatatgcatctggacgc 47256236  T
Q  369 gagaaatgcaaatctac 385  Q
    |||||||||||||||||    
T  47256235 gagaaatgcaaatctac 47256219  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 45445539 - 45445455
Alignment:
Q  272 tgtttgtttttgcggtgaatacaagcttaaagtgcgttttctct-aaagctacaaaatgtagcttcttcattttcacgttaaata 355  Q
    |||||| |||||||| |||| |||||||||  | |||||||||| ||| ||| ||||| ||| ||||||||||||| || |||||    
T  45445539 tgtttgcttttgcggcgaatgcaagcttaacattcgttttctctaaaaactataaaatatagtttcttcattttcatgtaaaata 45445455  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 37114482 - 37114560
Alignment:
Q  322 acaaaatgtagcttcttcattttcacgttaaatatgccccaagacgtgagaaatgcaaatctaccgctattccaaacaa 400  Q
    |||||||||||||||| ||||||||||||||||||||     |||| ||||||||  | ||||| ||||||||||||||    
T  37114482 acaaaatgtagcttctccattttcacgttaaatatgcattgggacgcgagaaatgtcagtctactgctattccaaacaa 37114560  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 26368538 - 26368585
Alignment:
Q  311 tctctaaagctacaaaatgtagcttcttcattttcacgttaaatatgcc 359  Q
    |||||||||||||||||  |||||| || ||||||||||||||||||||    
T  26368538 tctctaaagctacaaaacatagcttgtt-attttcacgttaaatatgcc 26368585  T

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