View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11645_high_18 (Length: 412)
Name: NF11645_high_18
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 13447059 - 13446681
Alignment:
| Q |
20 |
gccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13447059 |
gccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcctggtatgaatataggagttgttggtcttggtg |
13446960 |
T |
|
| Q |
120 |
gacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacactt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446959 |
gacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacactt |
13446860 |
T |
|
| Q |
220 |
aggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaatttttattatttcagaaattgataa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13446859 |
aggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttcattatttcagaaattgataa |
13446760 |
T |
|
| Q |
320 |
tgt----taatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacacag |
394 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446759 |
tgttaattaatcaagaaactaataatgtacaacattttataggctgcaacgagtactttgaatggcattattgacacag |
13446681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 13426399 - 13426027
Alignment:
| Q |
20 |
gccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
13426399 |
gccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcctggtatgaatataggcgttgttggtcttggtg |
13426300 |
T |
|
| Q |
120 |
gacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacactt |
219 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||||||| ||||||| || ||||||||||| |||||||| || |
|
|
| T |
13426299 |
gacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacattt |
13426200 |
T |
|
| Q |
220 |
aggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaatttttattatttcagaaattgataa |
319 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||| || || |
|
|
| T |
13426199 |
aggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtatatgattcatttgattgatttgcgaa-tttcattatttcagaaatcgagaa |
13426101 |
T |
|
| Q |
320 |
tgttaatcaagaaactaatattgtacaacgtttt-ataggctgcaacgagtactttgaatggcattattgacac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
13426100 |
tgttaatcaagaaactaatattgtacaacgttttaataggctgcaatgggtactttgaatggtattatcgacac |
13426027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 13419508 - 13419135
Alignment:
| Q |
20 |
gccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtg |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
13419508 |
gccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgttgttggtcttggtg |
13419409 |
T |
|
| Q |
120 |
gacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacactt |
219 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||| | || ||||||||||||||||||||||| |
|
|
| T |
13419408 |
gacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacactt |
13419309 |
T |
|
| Q |
220 |
aggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaatttttattatttcagaaattgataa |
319 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||| || | ||||| |||||||| || |
|
|
| T |
13419308 |
gggagctgactcgtttctagtaagccgcgatcctgatcagatgcaggtatatgattcatttgattcatttgtgaa-ttaaaatattttagaaattggcaa |
13419210 |
T |
|
| Q |
320 |
tgttaatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacacag |
394 |
Q |
| |
|
|| ||||||| |||||||||||||||||| ||| |||| |||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
13419209 |
tggtaatcaataaactaatattgtacaacatttcatagactgcaatgggtactttgaatggtattattgacacag |
13419135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 13453979 - 13453764
Alignment:
| Q |
53 |
tatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaag |
152 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| || |||| |
|
|
| T |
13453979 |
tatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtgttgttggtcttggtggacttggccatatggccgtgaaattcgccaaag |
13453880 |
T |
|
| Q |
153 |
cttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatcc |
252 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||||| ||||| |
|
|
| T |
13453879 |
ctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaaggaagcattagaacacttacgagcggactcatttctaataagccgtgatcc |
13453780 |
T |
|
| Q |
253 |
agaacagatgcaggta |
268 |
Q |
| |
|
| | |||||| ||||| |
|
|
| T |
13453779 |
aaagcagatgaaggta |
13453764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 13413160 - 13412958
Alignment:
| Q |
23 |
ggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggac |
122 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || |||||||||||| || |||||||||||| ||||||||| | ||||||| ||||| ||||||||||||| |
|
|
| T |
13413160 |
ggtcctctcctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacatataggtgttgttggtcttggtggac |
13413061 |
T |
|
| Q |
123 |
ttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttagg |
222 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
13413060 |
ttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagcaatagaacacttagg |
13412961 |
T |
|
| Q |
223 |
agc |
225 |
Q |
| |
|
||| |
|
|
| T |
13412960 |
agc |
13412958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 13385424 - 13385623
Alignment:
| Q |
26 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
125 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||||||| | |||||||||||||| |||||| | || | || ||||| ||||||||||| |||| |
|
|
| T |
13385424 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatactttggactcgacaaacctggtcttcatgtcggtgttgttggtcttggtgggcttg |
13385523 |
T |
|
| Q |
126 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
225 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
13385524 |
gtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagc |
13385623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 13393676 - 13393851
Alignment:
| Q |
50 |
gtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgcta |
149 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||| | |
|
|
| T |
13393676 |
gtgtatagtcctcttcgatattttggactcgacaagcctggtatgaatataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaa |
13393775 |
T |
|
| Q |
150 |
aagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
225 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||| || || || || || || |||||||||||| || ||||||| |
|
|
| T |
13393776 |
aagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagc |
13393851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 13389245 - 13389444
Alignment:
| Q |
26 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
125 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||||||| ||| ||||||||| || |||||| | |||||| ||||| ||||||||||| |||| |
|
|
| T |
13389245 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatattatggactcgataaacctggtcttcgtataggtgttgttggtcttggtgggcttg |
13389344 |
T |
|
| Q |
126 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
225 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| | || || || |||||||| || || || || || || ||||||||||||||||||||||| |
|
|
| T |
13389345 |
gtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagc |
13389444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 13373245 - 13373039
Alignment:
| Q |
25 |
tcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggactt |
124 |
Q |
| |
|
|||||||||||| || || ||||||| ||||| ||| | | | |||||||||| ||||||||||| | || | || || || |||||||||||| | |
|
|
| T |
13373245 |
tcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggtttacatgtgggtgtggttggtcttggtggatta |
13373146 |
T |
|
| Q |
125 |
ggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggag |
224 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| || || || || || || || ||||| || | |||||||| || ||||||||||||| |
|
|
| T |
13373145 |
ggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggag |
13373046 |
T |
|
| Q |
225 |
cagactc |
231 |
Q |
| |
|
| ||||| |
|
|
| T |
13373045 |
ctgactc |
13373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 13379046 - 13378835
Alignment:
| Q |
20 |
gccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtg |
119 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||||||| || | | |||||||||| | ||||| ||||| || ||||||| || || |||||||||| |
|
|
| T |
13379046 |
gccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttggtcttggtg |
13378947 |
T |
|
| Q |
120 |
gacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacactt |
219 |
Q |
| |
|
|| | ||||||||||||||||| || || ||||| ||||||| ||| || ||||| | ||||| || ||||| || | |||||||| || |||| ||| |
|
|
| T |
13378946 |
gattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgctt |
13378847 |
T |
|
| Q |
220 |
aggagcagactc |
231 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
13378846 |
aggagctgactc |
13378835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 47601325 - 47601119
Alignment:
| Q |
25 |
tcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggactt |
124 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| || ||||||||||||| || ||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
47601325 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggactt |
47601226 |
T |
|
| Q |
125 |
ggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggag |
224 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||| ||||||| |||| |||||||| |
|
|
| T |
47601225 |
ggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
47601126 |
T |
|
| Q |
225 |
cagactc |
231 |
Q |
| |
|
| ||||| |
|
|
| T |
47601125 |
ctgactc |
47601119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 28430712 - 28430767
Alignment:
| Q |
110 |
ggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28430712 |
ggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
28430767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University