View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_27 (Length: 328)
Name: NF11645_high_27
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 10239594 - 10239281
Alignment:
| Q |
1 |
aaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgtagcacgtgtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239594 |
aaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgtagcacgtgtgtt |
10239495 |
T |
|
| Q |
101 |
aactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239494 |
aactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttcct |
10239395 |
T |
|
| Q |
201 |
tatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239394 |
tatgaaatcaaagttacaccaaacggtgatatccaaacaataggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattg |
10239295 |
T |
|
| Q |
301 |
actccgacacaggt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
10239294 |
actccgacacaggt |
10239281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 10230814 - 10230504
Alignment:
| Q |
1 |
aaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgtagcacgtgtgtt |
100 |
Q |
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||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
10230814 |
aaaacaaagctggtcaccaacttatcccaaacgtgttttctggtttcaactcgcttattgctttagcggcacgtggatccgtggttgtagcacgggtgtt |
10230715 |
T |
|
| Q |
101 |
aactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttcct |
200 |
Q |
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||| ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10230714 |
aaccggtcagtataacccatctaacggcattggattggtcaacacaagtttagctctgtttggtaaccgtctttttgctttaggagaatcagatcttcct |
10230615 |
T |
|
| Q |
201 |
tatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattg |
300 |
Q |
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|||||| ||||| | |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| | |
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| T |
10230614 |
tatgaagtcaaactaacaccaaacggtgacatccaaacaatgggccgttatgatttcaacggcaaactcttgatgagtatgacggcgcatcctaaaatag |
10230515 |
T |
|
| Q |
301 |
actccgacaca |
311 |
Q |
| |
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|||| |||||| |
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| T |
10230514 |
actctgacaca |
10230504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 10255011 - 10255324
Alignment:
| Q |
1 |
aaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgtagcacgtgtgtt |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | || || |||||||| || || | | ||||||||| | |
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| T |
10255011 |
aaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcat |
10255110 |
T |
|
| Q |
101 |
aactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttcct |
200 |
Q |
| |
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| |||| || || ||||| |||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
10255111 |
atctggacaatacaatccttctaacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttcct |
10255210 |
T |
|
| Q |
201 |
tatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattg |
300 |
Q |
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||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||| |
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| T |
10255211 |
tatgaaatcaatcttacgccaaacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattg |
10255310 |
T |
|
| Q |
301 |
actccgacacaggt |
314 |
Q |
| |
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|| |||||||||| |
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| T |
10255311 |
acggcgacacaggt |
10255324 |
T |
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