View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_35 (Length: 309)
Name: NF11645_high_35
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 2357483 - 2357773
Alignment:
| Q |
1 |
actctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactcttatacacatttttataaaattttcacttcat |
100 |
Q |
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| T |
2357483 |
actctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactcttatacacatttttataaaattttcacttcat |
2357582 |
T |
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| Q |
101 |
ttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaa |
200 |
Q |
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| T |
2357583 |
ttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttactgaaaaatcctcatacattggaaaaagcaa |
2357682 |
T |
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| Q |
201 |
aagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaaga |
291 |
Q |
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| T |
2357683 |
aagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaacaagttggtgtaccttcaagcgataatcaaaga |
2357773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 291
Target Start/End: Original strand, 2362891 - 2363088
Alignment:
| Q |
94 |
acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaa |
193 |
Q |
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| T |
2362891 |
acttcttttacagacactaatcgggggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttgcttagaaatcctctaatattgaaa |
2362990 |
T |
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| Q |
194 |
aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaaga |
291 |
Q |
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| T |
2362991 |
aaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaaga |
2363088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 2351285 - 2351380
Alignment:
| Q |
119 |
ggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgac |
214 |
Q |
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| T |
2351285 |
ggaggaagtgacacaagtagtgttactcttacatgggcaatatgtttactattgaaaaatcctcttgtattgaaaaaagcaaaagaagaacttgac |
2351380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 2368684 - 2368756
Alignment:
| Q |
141 |
ttacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttga |
213 |
Q |
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| T |
2368684 |
ttacccttacatgggcaatatgtttgttacttagaaatcctctaatattggaaaaagcaaaagaagaacttga |
2368756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 2307175 - 2307242
Alignment:
| Q |
143 |
acccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaact |
210 |
Q |
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| T |
2307175 |
acccttacatgggcactatgtttgctattgaacaatcctcttgtaatggaaaaagcaaaagaagaact |
2307242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 291
Target Start/End: Original strand, 4305589 - 4305786
Alignment:
| Q |
94 |
acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaa |
193 |
Q |
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| T |
4305589 |
acttcgtttaaagacactgattgcaggaggagttgacacaactagtgtcacccttatatgggcaatgtgtttgttactggaaaatcctcttgtaatagaa |
4305688 |
T |
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| Q |
194 |
aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaaga |
291 |
Q |
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|||||| ||| |||||||||| |||| ||||| | ||| | ||||||| | ||||||||||| | |||||||| |||||||||| |||| ||||||| |
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| T |
4305689 |
aaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcggatatagacaagttggtataccttcaagcgatagtcaaaga |
4305786 |
T |
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