View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11645_high_39 (Length: 286)
Name: NF11645_high_39
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 44069537 - 44069808
Alignment:
| Q |
1 |
accattttggcaagtgtgatgattggtaatgtaagcactttgccaagttaatttgtcatttatgttgtttgagtttagtgagcgtttgagttgatatatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44069537 |
accattttggcaagtttgatgattggtaatggaagcactttgccaagttaatttgtcatttaggttgtttgagtttattgagcgtttgagttgatatatt |
44069636 |
T |
|
| Q |
101 |
gtatcctcataaagctctaagcaatcttcccatgctgatttggcatgcttgtctttgaaattatttaattccatggttgatacaagtttgtgtgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44069637 |
gtatcctcataaagctctaaacaatcctcccatgctgatttggcatgcttgtctttgaaattatttaattccatggttgatacaagtttgtgagcttcaa |
44069736 |
T |
|
| Q |
201 |
tggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44069737 |
tggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttat |
44069808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 44094786 - 44095057
Alignment:
| Q |
1 |
accattttggcaagtgtgatgattggtaatgtaagcactttgccaagttaatttgtcatttatgttgtttgagtttagtgagcgtttgagttgatatatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44094786 |
accattttggcaagtttgatgattggtaatggaagcactttgccaagttaatttatcatttaggttgtttgagtttattgagcgtttgagttgatatatt |
44094885 |
T |
|
| Q |
101 |
gtatcctcataaagctctaagcaatcttcccatgctgatttggcatgcttgtctttgaaattatttaattccatggttgatacaagtttgtgtgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44094886 |
gtatcctcataaagctctaaacaatcctcccatgctgatttggcatgcttgtctttgaaattatttaattccatggttgatacaagtttgtgtgcttcaa |
44094985 |
T |
|
| Q |
201 |
tggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttat |
272 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44094986 |
tggcttggtccaaggtaaccttaagtacaatatcatggaaggaagaagaagaatctagggttgatagtttat |
44095057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 44085568 - 44085297
Alignment:
| Q |
1 |
accattttggcaagtgtgatgattggtaatgtaagcactttgccaagttaatttgtcatttatgttgtttgagtttagtgagcgtttgagttgatatatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44085568 |
accattttggcaagtttgatgattggtaatggaagcactttgccaagttaatttatcatttaggttgtttgagtttattgagcgtttgagttgatatatt |
44085469 |
T |
|
| Q |
101 |
gtatcctcataaagctctaagcaatcttcccatgctgatttggcatgcttgtctttgaaattatttaattccatggttgatacaagtttgtgtgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44085468 |
gtatcctcataaagctctaaacaatcctcccatgctgatttggcatgcttgtctttgaaattatttaattccatggttgatacaagtttgtgagcttcaa |
44085369 |
T |
|
| Q |
201 |
tggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttat |
272 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44085368 |
tggcttggtccaaggtaaccttaagtacaatatcatggaaggaagaagaagaatctagggttgatagtttat |
44085297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University