View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_40 (Length: 270)
Name: NF11645_high_40
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 42198375 - 42198128
Alignment:
| Q |
7 |
tcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattc |
106 |
Q |
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| T |
42198375 |
tcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattc |
42198276 |
T |
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| Q |
107 |
ctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttggga |
206 |
Q |
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| T |
42198275 |
ctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatc-----aagttatgcacaagttggga |
42198181 |
T |
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| Q |
207 |
gtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
259 |
Q |
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| T |
42198180 |
gtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
42198128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 42210957 - 42210704
Alignment:
| Q |
1 |
gatctatcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggag |
100 |
Q |
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| T |
42210957 |
gatctatcatcaaacagtctcactggtccaatccctgagagtttagaaaagctcaagtatatggtgaaattaaatttgtccttcaacaaattggaagggg |
42210858 |
T |
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| Q |
101 |
acattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaag |
200 |
Q |
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| T |
42210857 |
aagttcctatggaaggtatttttatgaacctaagccaggttgatctccaaggtaacaacaaactatgtggccttaacaatc-----aagttatgcacaag |
42210763 |
T |
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| Q |
201 |
ttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
259 |
Q |
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| T |
42210762 |
ttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacattttactacctat |
42210704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 33700929 - 33701177
Alignment:
| Q |
6 |
atcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacatt |
105 |
Q |
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||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || || |
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| T |
33700929 |
atcatcaaacaatctcactggtccaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagtt |
33701028 |
T |
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| Q |
106 |
cctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttggg |
205 |
Q |
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| T |
33701029 |
cctatggaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgtggcgttaacaa-----tgaagttacccacaagttagg |
33701123 |
T |
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| Q |
206 |
agtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
259 |
Q |
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||| ||||||| ||||||| ||| ||| |||| | |||||||||||| ||||| |
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| T |
33701124 |
agtcactttgtgtgttgcatctaagaaaaacaaaacaaacattttactacctat |
33701177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 42223173 - 42222989
Alignment:
| Q |
1 |
gatctatcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggag |
100 |
Q |
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||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| | |
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| T |
42223173 |
gatctatcatcaaacaatctcactggttcaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaagggg |
42223074 |
T |
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| Q |
101 |
acattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagt |
185 |
Q |
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| T |
42223073 |
aagttcctatggaaggcgtttttatgaacctaagccaggttgatatccaaggtaacaacaaactatgtggccttaacaatgaagt |
42222989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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