View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_41 (Length: 270)
Name: NF11645_high_41
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 44823285 - 44823223
Alignment:
| Q |
61 |
cttggaatcagcttatgtatatattataaacaccaatatcatacaagacgtgggataggggac |
123 |
Q |
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| T |
44823285 |
cttggaatcagcttatgtatatattataaacaccaatatcatacaagatgtgggataggggac |
44823223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 44823125 - 44823092
Alignment:
| Q |
221 |
atgtaatttcaacaaacaaaccttgtaaaccaac |
254 |
Q |
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| T |
44823125 |
atgtaatttcaacaaacaaaccttgtaaaccaac |
44823092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 44823341 - 44823313
Alignment:
| Q |
11 |
cagagatcatgataagtattataaacatc |
39 |
Q |
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| T |
44823341 |
cagagatcatgataagtattataaacatc |
44823313 |
T |
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