View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_high_44 (Length: 266)

Name: NF11645_high_44
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_high_44
NF11645_high_44
[»] chr5 (10 HSPs)
chr5 (2-261)||(35276181-35276440)
chr5 (48-114)||(33629381-33629447)
chr5 (48-114)||(1138628-1138694)
chr5 (48-113)||(1456059-1456124)
chr5 (48-100)||(1164845-1164897)
chr5 (48-100)||(19976331-19976383)
chr5 (6-114)||(24397282-24397389)
chr5 (47-114)||(32623251-32623318)
chr5 (56-114)||(4266059-4266117)
chr5 (57-109)||(1384369-1384421)
[»] chr3 (25 HSPs)
chr3 (48-114)||(35368802-35368868)
chr3 (6-114)||(12838105-12838212)
chr3 (48-114)||(22101234-22101300)
chr3 (48-114)||(32237430-32237496)
chr3 (48-113)||(26977759-26977824)
chr3 (48-113)||(44920683-44920748)
chr3 (48-100)||(26976892-26976944)
chr3 (6-114)||(25446277-25446385)
chr3 (48-114)||(8831810-8831876)
chr3 (56-114)||(22176186-22176244)
chr3 (48-114)||(26906523-26906589)
chr3 (48-114)||(36278792-36278858)
chr3 (48-104)||(43150549-43150605)
chr3 (48-104)||(55340339-55340395)
chr3 (48-114)||(3970527-3970593)
chr3 (48-114)||(4072309-4072375)
chr3 (48-114)||(10254638-10254704)
chr3 (48-114)||(13078199-13078265)
chr3 (48-114)||(21969193-21969259)
chr3 (48-114)||(21991629-21991695)
chr3 (6-104)||(25488387-25488484)
chr3 (6-104)||(25561039-25561136)
chr3 (48-113)||(32363123-32363188)
chr3 (48-104)||(43639127-43639183)
chr3 (48-104)||(44611427-44611483)
[»] chr2 (17 HSPs)
chr2 (47-113)||(9933606-9933672)
chr2 (48-114)||(12850578-12850644)
chr2 (48-114)||(42713813-42713879)
chr2 (6-114)||(23835904-23836012)
chr2 (48-114)||(3116945-3117011)
chr2 (48-114)||(16705802-16705868)
chr2 (48-114)||(9850794-9850860)
chr2 (48-114)||(24101868-24101934)
chr2 (48-114)||(43476015-43476081)
chr2 (48-114)||(45408694-45408760)
chr2 (48-113)||(9281384-9281449)
chr2 (48-104)||(7737134-7737190)
chr2 (48-114)||(1924016-1924082)
chr2 (56-114)||(2818743-2818801)
chr2 (48-102)||(6605804-6605858)
chr2 (48-114)||(27920641-27920707)
chr2 (6-104)||(20892912-20893010)
[»] chr8 (8 HSPs)
chr8 (2-114)||(29780995-29781106)
chr8 (48-114)||(37114307-37114373)
chr8 (6-114)||(15882228-15882336)
chr8 (48-114)||(38629543-38629609)
chr8 (48-114)||(40891082-40891148)
chr8 (49-114)||(4262012-4262077)
chr8 (48-114)||(38520087-38520153)
chr8 (49-114)||(24741859-24741924)
[»] chr1 (23 HSPs)
chr1 (6-114)||(15324654-15324762)
chr1 (48-114)||(14387051-14387117)
chr1 (48-114)||(27240960-27241026)
chr1 (6-104)||(9978097-9978195)
chr1 (49-114)||(51276731-51276796)
chr1 (48-104)||(957658-957714)
chr1 (48-114)||(2854568-2854634)
chr1 (48-114)||(6079453-6079519)
chr1 (48-114)||(23698538-23698604)
chr1 (49-114)||(40647188-40647253)
chr1 (48-113)||(48954251-48954316)
chr1 (48-104)||(19954957-19955013)
chr1 (49-104)||(29598393-29598448)
chr1 (6-114)||(42561331-42561438)
chr1 (47-114)||(51789633-51789700)
chr1 (48-114)||(1387847-1387913)
chr1 (48-114)||(3607765-3607831)
chr1 (48-114)||(5189538-5189604)
chr1 (48-114)||(19797017-19797083)
chr1 (48-114)||(47940606-47940672)
chr1 (48-114)||(49284330-49284396)
chr1 (49-114)||(27670213-27670278)
chr1 (48-104)||(4299438-4299494)
[»] scaffold0122 (1 HSPs)
scaffold0122 (6-113)||(45862-45968)
[»] chr7 (16 HSPs)
chr7 (6-113)||(30259103-30259209)
chr7 (48-114)||(31521561-31521627)
chr7 (48-114)||(45997544-45997610)
chr7 (48-114)||(3953078-3953144)
chr7 (48-114)||(24123791-24123857)
chr7 (48-114)||(24836089-24836155)
chr7 (48-114)||(30594762-30594828)
chr7 (49-114)||(31231650-31231715)
chr7 (48-104)||(12142262-12142318)
chr7 (48-100)||(16876506-16876558)
chr7 (48-104)||(20184284-20184340)
chr7 (6-114)||(39617877-39617985)
chr7 (50-104)||(10465154-10465208)
chr7 (48-114)||(35339314-35339380)
chr7 (50-107)||(10428094-10428151)
chr7 (48-104)||(40358184-40358240)
[»] chr4 (19 HSPs)
chr4 (6-113)||(1298940-1299046)
chr4 (48-114)||(24915830-24915896)
chr4 (48-100)||(3422479-3422531)
chr4 (9-104)||(4895003-4895097)
chr4 (48-114)||(13204446-13204512)
chr4 (48-114)||(42274528-42274594)
chr4 (6-114)||(27434638-27434745)
chr4 (48-114)||(28809882-28809949)
chr4 (47-114)||(35360744-35360811)
chr4 (48-114)||(530705-530771)
chr4 (48-114)||(4552854-4552920)
chr4 (48-114)||(18417726-18417792)
chr4 (48-114)||(21048741-21048807)
chr4 (48-114)||(24969577-24969643)
chr4 (48-114)||(32318756-32318822)
chr4 (47-81)||(52824307-52824341)
chr4 (48-102)||(55107593-55107647)
chr4 (48-104)||(23928613-23928669)
chr4 (50-114)||(56552132-56552196)
[»] scaffold0086 (1 HSPs)
scaffold0086 (48-104)||(48195-48251)
[»] chr6 (6 HSPs)
chr6 (48-114)||(4890516-4890582)
chr6 (48-114)||(13439765-13439831)
chr6 (48-114)||(14393633-14393699)
chr6 (48-114)||(15546701-15546767)
chr6 (6-104)||(885413-885510)
chr6 (48-104)||(18998162-18998218)
[»] scaffold0013 (1 HSPs)
scaffold0013 (48-113)||(94241-94306)
[»] scaffold0163 (1 HSPs)
scaffold0163 (47-114)||(1975-2042)
[»] scaffold0188 (1 HSPs)
scaffold0188 (48-114)||(7155-7221)
[»] scaffold0107 (1 HSPs)
scaffold0107 (48-113)||(51132-51197)
[»] scaffold0137 (1 HSPs)
scaffold0137 (48-100)||(10184-10236)
[»] scaffold0018 (1 HSPs)
scaffold0018 (48-104)||(138323-138379)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 35276440 - 35276181
Alignment:
Q  2 tagatgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttag 101  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35276440 tagatgctttttgtatagttcttacctaaaaatacacatttttttagatataataaactttaagaaaattatggatttgataaaatcatggtaaatttag 35276341  T
Q  102 ttataaaccatacnnnnnnncacctaagttattgtaagtaagnnnnnnnncctaaaacttataactcttggggttatgctctttcaatttaatgtagtat 201  Q
    |||||||||||||       ||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35276340 ttataaaccatacaaaaaaacacctaagttattgtaactaagttttttttcctaaaacttataactcttggggttatgctctttcaatttaatgtagtat 35276241  T
Q  202 tccacggttattattatgtttacttaacaccacctatgaagcaccttctttcttctctct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35276240 tccacggttattattatgtttacttaacaccacctatgaagcaccttctttcttctctct 35276181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 33629447 - 33629381
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||  ||||||||    
T  33629447 gatataacaaactttgagaaaattatggatttgagaaaatcatagtgaatttagttaagaaccatac 33629381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 1138628 - 1138694
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||| | ||||||||||  ||||||||    
T  1138628 gatataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaaccatac 1138694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 1456124 - 1456059
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||| ||||||| |||||||||||||||||| ||||| | ||| ||||||||||| |||||||    
T  1456124 gatataacaaactttgagaaaattatggatttgagaaaattacagtgaatttagttatgaaccata 1456059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 1164897 - 1164845
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaattta 100  Q
    ||||||||||||||| | |||||||||||||| | |||||||| |||||||||    
T  1164897 gatataataaacttttaaaaaattatggatttaaaaaaatcatggtaaattta 1164845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 19976331 - 19976383
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaattta 100  Q
    ||||| ||||||||| ||||||||||||||||||  ||||||| |||||||||    
T  19976331 gatatgataaactttgagaaaattatggatttgaggaaatcatggtaaattta 19976383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 24397389 - 24397282
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    ||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||     
T  24397389 tgcttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcat-gtgaatttagttaa 24397291  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  24397290 gaaccatac 24397282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 32623318 - 32623251
Alignment:
Q  47 agatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||||| ||||||| ||||||||||||||||    |||||||||| ||||||||||  ||||||||    
T  32623318 agatataacaaactttgagaaaattatggatttacagaaatcatagtgaatttagttaagaaccatac 32623251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 4266059 - 4266117
Alignment:
Q  56 aaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||||||||||||||  ||||||  || ||||||||||  ||||||||    
T  4266059 aaactttaagaaaattatggatttgaagaaatcacggtgaatttagttaagaaccatac 4266117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 1384421 - 1384369
Alignment:
Q  57 aactttaagaaaattatggatttgataaaatcatagtaaatttagttataaac 109  Q
    |||||| |||||||||| |||||||  |||||||| |||||||||||| ||||    
T  1384421 aactttgagaaaattatagatttgaggaaatcataataaatttagttaaaaac 1384369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 35368802 - 35368868
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||||| |||||||| || |||||||||| |||||||||    
T  35368802 gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaaaaaccatac 35368868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 12838105 - 12838212
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||     
T  12838105 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaa 12838203  T
Q  106 aaaccatac 114  Q
    |||||||||    
T  12838204 aaaccatac 12838212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 22101234 - 22101300
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||||| ||||||||||  ||||||||    
T  22101234 gatataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaaccatac 22101300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 32237496 - 32237430
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||| ||| |||||||| |||||||||||||  ||||||||    
T  32237496 gatataacaaactttgagaaaattatggatctgagaaaatcatggtaaatttagttaagaaccatac 32237430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 26977759 - 26977824
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    |||| |||||||||| ||||||||||||||||||  |||||||| ||||||||||||  |||||||    
T  26977759 gatacaataaactttgagaaaattatggatttgaggaaatcatactaaatttagttaagaaccata 26977824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 44920748 - 44920683
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||||||||||| ||||||||||  |||||| |||||||| |||||||||||||  |||||||    
T  44920748 gatataataaactttgagaaaattataaatttgagaaaatcattgtaaatttagttaagaaccata 44920683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 26976944 - 26976892
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaattta 100  Q
    |||| |||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  26976944 gatacaataaactttgagaaaattatggatttgagaaaatcatactaaattta 26976892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 25446277 - 25446385
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    ||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||     
T  25446277 tgcttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaa 25446376  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  25446377 gaaccatac 25446385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 8831810 - 8831876
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  8831810 gatataacaaactttgagaaaattatggatttgaagaaatcatggtgaatttagttaagaaccatac 8831876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 22176186 - 22176244
Alignment:
Q  56 aaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||||||||||||||  |||||||||| ||||||||||  ||||||||    
T  22176186 aaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaaccatac 22176244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 26906523 - 26906589
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||  ||||||||    
T  26906523 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatac 26906589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 36278858 - 36278792
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||  ||||||||    
T  36278858 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatac 36278792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 43150549 - 43150605
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||    
T  43150549 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagtta 43150605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 55340395 - 55340339
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| |||||||||||||||||| |||||||| || ||| ||||||    
T  55340395 gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatatagtta 55340339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 3970593 - 3970527
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||| |  ||||||| || ||||||||||  ||||||||    
T  3970593 gatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatac 3970527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 4072375 - 4072309
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||| ||  ||||||| || ||||||||||  ||||||||    
T  4072375 gatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaaccatac 4072309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 10254638 - 10254704
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| | |||||||||||||||| ||||||||  | ||||||||||  ||||||||    
T  10254638 gatataacaaactttgaaaaaattatggatttgagaaaatcatgatgaatttagttaagaaccatac 10254704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 13078265 - 13078199
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||| |  ||||||| || ||||||||||  ||||||||    
T  13078265 gatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatac 13078199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 21969259 - 21969193
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||| |  ||||||| || ||||||||||  ||||||||    
T  21969259 gatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatac 21969193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 21991695 - 21991629
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||| |  ||||||| || ||||||||||  ||||||||    
T  21991695 gatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatac 21991629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 25488484 - 25488387
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||| |||  ||||||| || ||||||||||    
T  25488484 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagtta 25488387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 25561039 - 25561136
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||| |||  ||||||| || ||||||||||    
T  25561039 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagtta 25561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 32363123 - 32363188
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||| ||| ||| | |||||||||||||||| ||||| || |||||||||||||  |||||||    
T  32363123 gatataacaaatttttaaaaaattatggatttgagaaaattattgtaaatttagttaataaccata 32363188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 43639183 - 43639127
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||| ||||    
T  43639183 gatataacaaactttgagaaaattatggatttgaagaaatcatggtgaatttggtta 43639127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 44611483 - 44611427
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| || ||||||||||    
T  44611483 gatataacaaactttgagaaaattatgaatttgaagaaatcatggtgaatttagtta 44611427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 9933672 - 9933606
Alignment:
Q  47 agatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    |||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||  |||||||    
T  9933672 agatataataaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccata 9933606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 12850644 - 12850578
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| ||||||||||||| |||||||||    
T  12850644 gatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttagttaaaaaccatac 12850578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 42713879 - 42713813
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||  ||||||||    
T  42713879 gatataataaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatac 42713813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 23835904 - 23836012
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    ||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  ||||||| |||||||| ||||     
T  23835904 tgcttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtaaattttgttaa 23836003  T
Q  106 aaaccatac 114  Q
    |||||||||    
T  23836004 aaaccatac 23836012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 3116945 - 3117011
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||| | ||||||||||  ||||||||    
T  3116945 gatataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaaccatac 3117011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 16705802 - 16705868
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| | |||||||||| ||||| ||||||||||| |||||||||| |||||||||    
T  16705802 gatataacaaactttgataaaattatggctttgagaaaatcatagtgaatttagttaaaaaccatac 16705868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 9850860 - 9850794
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||| ||| |||||||||||||||| | |||||||| |||||||||||||  ||||||||    
T  9850860 gatataacaaattttgagaaaattatggatttaagaaaatcatggtaaatttagttaagaaccatac 9850794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 24101934 - 24101868
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| ||| |||||||||  ||||||||    
T  24101934 gatataacaaactttgagaaaattatggatttgaggaaatcatggtatatttagttaagaaccatac 24101868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 43476015 - 43476081
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| ||||||||||| ||||||  ||||||| || ||||||||||  ||||||||    
T  43476015 gatataataaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatac 43476081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 45408694 - 45408760
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| ||||||||| |||  ||||||||    
T  45408694 gatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttaattaagaaccatac 45408760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 9281449 - 9281384
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||  |||||||    
T  9281449 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccata 9281384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 7737134 - 7737190
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| |||||||||||| |||||  ||||||| |||||||||||||    
T  7737134 gatataacaaactttgagaaaattatggctttgaggaaatcatggtaaatttagtta 7737190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 1924082 - 1924016
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||| ||  ||||||| || ||||||||||  ||||||||    
T  1924082 gatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaaccatac 1924016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 2818743 - 2818801
Alignment:
Q  56 aaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  2818743 aaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 2818801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 6605804 - 6605858
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagt 102  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| |||||||||||    
T  6605804 gatataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttagt 6605858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 27920641 - 27920707
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| | ||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  27920641 gatataacaaactttgaaaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 27920707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 20892912 - 20893010
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||| |||| || |||  ||||||||    
T  20892912 tgcttttcgtatggttcttaactaaaaatacatatttttatggatataacaaactttgagaaaattatggatttgatgaaattattgtatttttagtta 20893010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 29781106 - 29780995
Alignment:
Q  2 tagatgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttag 101  Q
    ||||||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  |||| || ||||||||||    
T  29781106 tagatgcttttcgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatttgaggaaattatggtaaatttag 29781008  T
Q  102 ttataaaccatac 114  Q
    ||| |||||||||    
T  29781007 ttaaaaaccatac 29780995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 37114307 - 37114373
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| |||||||||||||||| | |||||||| || ||||||||||  ||||||||    
T  37114307 gatataataaactttgagaaaattatggatttaagaaaatcatggtgaatttagttaagaaccatac 37114373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 15882228 - 15882336
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||| ||||||| ||||||||||| |        |||||||  |||||| |||| ||||||||||||| |||||||| || ||||||||||     
T  15882228 tgctttttgtatggttcttaactaaaaatacatatttttttggatataactaactttgagaatattatggatttgagaaaatcatggtgaatttagttaa 15882327  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  15882328 gaaccatac 15882336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 38629543 - 38629609
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| ||||||||||| ||||||  ||||||| || ||||||||||  ||||||||    
T  38629543 gatataataaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatac 38629609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 40891082 - 40891148
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  40891082 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 40891148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 4262077 - 4262012
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||| ||||||| ||||||||||||| ||||  |||||||||| ||||||||||  ||||||||    
T  4262077 atataacaaactttgagaaaattatggacttgaggaaatcatagtgaatttagttaagaaccatac 4262012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 38520087 - 38520153
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| || |||||||||| ||| |||||    
T  38520087 gatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaaaaaacatac 38520153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 24741924 - 24741859
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||||||||| | ||||||| ||||||||||  ||||||| || ||||||||||  ||||||||    
T  24741924 atataataaactctgagaaaatcatggatttgaggaaatcatggtgaatttagttaagaaccatac 24741859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 15324654 - 15324762
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    ||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  |||||||||| ||||||||||     
T  15324654 tgcttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaa 15324753  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  15324754 gaaccatac 15324762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 14387117 - 14387051
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  14387117 gatataataaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 14387051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 27241026 - 27240960
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||  ||||||||    
T  27241026 gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatac 27240960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 9978195 - 9978097
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| |||| ||||||| ||||||||||| |        ||||||| ||||||| ||||||||||||||||||  |||||||||| ||||||||||    
T  9978195 tgcttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagtta 9978097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 51276796 - 51276731
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||||||||||| ||||||||||||||||||  |||||||| | ||||||||||  ||||||||    
T  51276796 atataataaactttgagaaaattatggatttgaggaaatcataatgaatttagttaagaaccatac 51276731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 957658 - 957714
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||    
T  957658 gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagtta 957714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 2854634 - 2854568
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||  ||||||||    
T  2854634 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatac 2854568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 6079453 - 6079519
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  6079453 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 6079519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 23698604 - 23698538
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||  ||||||||    
T  23698604 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatac 23698538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 40647188 - 40647253
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||| ||||||| ||||||||||||||||||  ||||||| || |||||||||| ||| |||||    
T  40647188 atataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaatcatac 40647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 48954316 - 48954251
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||| ||||||| ||||||||||| ||||||  |||||||||| ||||||||||  |||||||    
T  48954316 gatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccata 48954251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 19955013 - 19954957
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||    
T  19955013 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagtta 19954957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 29598393 - 29598448
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    |||||| ||||||| |||||||||||||||| |  |||||||||| ||||||||||    
T  29598393 atataacaaactttgagaaaattatggatttaaggaaatcatagtgaatttagtta 29598448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 42561438 - 42561331
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||| |||  ||||||| || ||||||||||     
T  42561438 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaa 42561340  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  42561339 gaaccatac 42561331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 51789700 - 51789633
Alignment:
Q  47 agatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||||| | ||||| ||||||||||||| ||||  ||||||| || |||||||||| |||||||||    
T  51789700 agatataacatactttgagaaaattatggaattgaggaaatcatggtgaatttagttaaaaaccatac 51789633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 1387847 - 1387913
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| ||||||||||| ||||||  ||||||| |||  ||||||||  ||||||||    
T  1387847 gatataataaactttgagaaaattatgaatttgaggaaatcatggtatctttagttaagaaccatac 1387913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 3607831 - 3607765
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||  | ||||||||||  ||||||||    
T  3607831 gatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatac 3607765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 5189538 - 5189604
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||| |  ||||||| || ||||||||||  ||||||||    
T  5189538 gatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatac 5189604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 19797083 - 19797017
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| | ||||||||||||||||  ||||||| |||  |||||||| |||||||||    
T  19797083 gatataacaaactttgaaaaaattatggatttgaggaaatcatggtatttttagttaaaaaccatac 19797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 47940672 - 47940606
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||| ||  ||||||| || ||||||||||  ||||||||    
T  47940672 gatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaaccatac 47940606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 49284396 - 49284330
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| | |||||||||||||| | |||||||| || ||||||||||  ||||||||    
T  49284396 gatataacaaactttgaaaaaattatggatttaagaaaatcatggtgaatttagttaagaaccatac 49284330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 27670213 - 27670278
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||| ||||||| |||||||||||||||| |  |||||||  | |||||||||| |||||||||    
T  27670213 atataaaaaactttgagaaaattatggatttaaggaaatcatgatgaatttagttaaaaaccatac 27670278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 4299494 - 4299438
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||||||||||  |||| || || ||||||||||    
T  4299494 gatataacaaactttgagaaaattatggatttgaggaaataatggtgaatttagtta 4299438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 45862 - 45968
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||     
T  45862 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaa 45960  T
Q  106 aaaccata 113  Q
     |||||||    
T  45961 gaaccata 45968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 30259209 - 30259103
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||     
T  30259209 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaa 30259111  T
Q  106 aaaccata 113  Q
     |||||||    
T  30259110 gaaccata 30259103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 31521627 - 31521561
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| | ||||||||| |||||| |||||||| |||||||||||||  ||||||||    
T  31521627 gatataataaactttgaaaaaattatgaatttgagaaaatcatggtaaatttagttaagaaccatac 31521561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 45997610 - 45997544
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||||||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  45997610 gatataataaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 45997544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 3953144 - 3953078
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| |||||||  |||||||||||||||||  ||||||| || |||||||||| |||||||||    
T  3953144 gatataacaaactttgtgaaaattatggatttgaggaaatcatggtgaatttagttaaaaaccatac 3953078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 24123857 - 24123791
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||||||  ||||||||  ||||||||    
T  24123857 gatataacaaactttgagaaaattatggatttgaggaaatcatagtatttttagttaggaaccatac 24123791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 24836089 - 24836155
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  24836089 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 24836155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 30594762 - 30594828
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  30594762 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 30594828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 31231715 - 31231650
Alignment:
Q  49 atataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  31231715 atataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 31231650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 12142262 - 12142318
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| || |||| |||||||||||||||||| |||||||| || ||||||||||    
T  12142262 gatataacaatctttgagaaaattatggatttgagaaaatcatggtgaatttagtta 12142318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 16876558 - 16876506
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaattta 100  Q
    ||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||    
T  16876558 gatataacaaactctaagaaaattacggatttgagaaaatcatggtaaattta 16876506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 20184340 - 20184284
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||    
T  20184340 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagtta 20184284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 39617985 - 39617877
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    ||||||| |||||||||||| ||||||||| | |        ||||||| ||||||| ||||||||||||||| ||  ||||||| || ||||||||||     
T  39617985 tgcttttcgtatagttcttaactaaaaataaatatttttttggatataacaaactttgagaaaattatggattggaggaaatcatggtgaatttagttaa 39617886  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  39617885 gaaccatac 39617877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 10465208 - 10465154
Alignment:
Q  50 tataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||| |||| || ||||||| |||||||| ||||||||||||| ||||||||||    
T  10465208 tataaaaaacattgagaaaatcatggatttaataaaatcatagttaatttagtta 10465154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 35339380 - 35339314
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||  | ||||||||||  ||||||||    
T  35339380 gatataacaaactttgagaaaattatggatttgaagaaatcatgatgaatttagttaagaaccatac 35339314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 10428151 - 10428094
Alignment:
Q  50 tataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataa 107  Q
    ||||| |||| || ||||||| || |||||| |||||||||||| |||||||||||||    
T  10428151 tataaaaaacattgagaaaatcattgatttgctaaaatcatagttaatttagttataa 10428094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 40358184 - 40358240
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| || ||||||||||    
T  40358184 gatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagtta 40358240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 1298940 - 1299046
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||     
T  1298940 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaa 1299038  T
Q  106 aaaccata 113  Q
     |||||||    
T  1299039 gaaccata 1299046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 24915896 - 24915830
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||  ||||||||    
T  24915896 gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatac 24915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 3422531 - 3422479
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaattta 100  Q
    |||| |||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  3422531 gatacaataaactttgagaaaattatggatttgagaaaatcatactaaattta 3422479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 4895003 - 4895097
Alignment:
Q  9 tttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||||||||||||| ||||||||||| |       | |||||| ||||||| ||||||||||| ||||||  ||||||| |||||||||||||    
T  4895003 tttttgtatagttcttaactaaaaatacatattttttga-atataacaaactttgagaaaattatgaatttgaggaaatcatggtaaatttagtta 4895097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 13204446 - 13204512
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| |||||||  |||||||||||||||||  ||||||| || |||||||||| |||||||||    
T  13204446 gatataacaaactttgtgaaaattatggatttgaggaaatcatggtgaatttagttaaaaaccatac 13204512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 42274594 - 42274528
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  42274594 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 42274528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 27434638 - 27434745
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttat 105  Q
    |||||||||||||||||||| |||||||||||          ||||||| ||||||| ||||||||||| ||||||  |||| || |||||||||||||     
T  27434638 tgctttttgtatagttcttaactaaaaatacattttttttg-gatataacaaactttgagaaaattatgaatttgaggaaattatggtaaatttagttaa 27434736  T
Q  106 aaaccatac 114  Q
     ||||||||    
T  27434737 gaaccatac 27434745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 28809949 - 28809882
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagt-aaatttagttataaaccatac 114  Q
    ||||||| ||| ||| |||||||||||||||||| |||||||| || ||||||||||| |||| ||||    
T  28809949 gatataacaaattttgagaaaattatggatttgagaaaatcatggtgaaatttagttaaaaacaatac 28809882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 35360744 - 35360811
Alignment:
Q  47 agatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||||| ||||||| |||||||||||||||| |  ||||||| || ||||||||||  ||||||||    
T  35360744 agatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatac 35360811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 530771 - 530705
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||| || || ||||||||||  ||||||||    
T  530771 gatataacaaactttgagaaaattatggatttgaggaaatgatggtgaatttagttaagaaccatac 530705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 4552854 - 4552920
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||  | ||||||||||  ||||||||    
T  4552854 gatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatac 4552920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 18417726 - 18417792
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || |||||| |||  ||||||||    
T  18417726 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttaattaagaaccatac 18417792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 21048807 - 21048741
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||  ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  21048807 gatataacaaacttcgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 21048741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 24969643 - 24969577
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| || ||||||||||  ||||||||    
T  24969643 gatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatac 24969577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 32318822 - 32318756
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| |||||||||||||| |||  ||||||| || ||||||||||  ||||||||    
T  32318822 gatataacaaactttgagaaaattatggatctgaggaaatcatggtgaatttagttaagaaccatac 32318756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 52824307 - 52824341
Alignment:
Q  47 agatataataaactttaagaaaattatggatttga 81  Q
    |||||||||||||||| ||||||||||||||||||    
T  52824307 agatataataaactttgagaaaattatggatttga 52824341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 55107593 - 55107647
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagt 102  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| |||||||||||    
T  55107593 gatataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttagt 55107647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 23928669 - 23928613
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||| ||| ||||||||||||||||||  ||||||| || ||||||||||    
T  23928669 gatataacaaattttgagaaaattatggatttgaggaaatcatggtgaatttagtta 23928613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 56552132 - 56552196
Alignment:
Q  50 tataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||| ||||||| ||||||||||||||||||  ||||||| || |||||| |||  ||||||||    
T  56552132 tataacaaactttgagaaaattatggatttgaggaaatcatggttaatttatttaagaaccatac 56552196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 48195 - 48251
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||    
T  48195 gatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagtta 48251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 4890582 - 4890516
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||| ||||||  ||||||| |||||||||||||  ||||||||    
T  4890582 gatataacaaactttgagaaaattatgaatttgaggaaatcatggtaaatttagttaagaaccatac 4890516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 13439765 - 13439831
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  13439765 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 13439831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 14393633 - 14393699
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  14393633 gatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 14393699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 15546701 - 15546767
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| ||||||||| |||  ||||||||    
T  15546701 gatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttaattaagaaccatac 15546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 885413 - 885510
Alignment:
Q  6 tgctttttgtatagttcttacctaaaaatacacannnnnnnagatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    |||||||||||| ||||||| ||||||||||| |        ||||||| ||||||| |||||||||||||||||| ||||||||  | ||||||||||    
T  885413 tgctttttgtatggttcttaactaaaaatacatattttttg-gatataacaaactttgagaaaattatggatttgagaaaatcatgatgaatttagtta 885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 18998218 - 18998162
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||| ||||||| ||||||||||||||| ||  ||||||| || ||||||||||    
T  18998218 gatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagtta 18998162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 94241 - 94306
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||| ||||| | |||||||| |||||||||||||||||| || ||||||||||  |||||||    
T  94241 gatataacaaactatgagaaaattttggatttgataaaatcatggtgaatttagttaagaaccata 94306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 2042 - 1975
Alignment:
Q  47 agatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    |||||||| |||||||  |||||||||||||||||  ||||||| || ||||||||||  ||||||||    
T  2042 agatataacaaactttgtgaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatac 1975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 7155 - 7221
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccatac 114  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||  | ||||||||||  ||||||||    
T  7155 gatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatac 7221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 51132 - 51197
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagttataaaccata 113  Q
    ||||||| ||||||| ||||||||||| |||| |  |||||||||| ||||||||||  |||||||    
T  51132 gatataacaaactttgagaaaattatgaatttaaggaaatcatagtgaatttagttaagaaccata 51197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 10184 - 10236
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaattta 100  Q
    ||||||| ||||||| |||||||||||||| ||| |||||||| || ||||||    
T  10184 gatataacaaactttgagaaaattatggatgtgagaaaatcatggtgaattta 10236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 138379 - 138323
Alignment:
Q  48 gatataataaactttaagaaaattatggatttgataaaatcatagtaaatttagtta 104  Q
    ||||||||||||||||| |||| ||||||||| | ||||||||  | ||||||||||    
T  138379 gatataataaactttaaaaaaaatatggatttaagaaaatcatgatgaatttagtta 138323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University