View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_high_45 (Length: 265)

Name: NF11645_high_45
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_high_45
NF11645_high_45
[»] chr8 (2 HSPs)
chr8 (152-224)||(12933811-12933883)
chr8 (175-212)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (152-224)||(14177081-14177153)
chr4 (152-222)||(28608724-28608794)
chr4 (160-213)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (145-182)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (145-182)||(796698-796735)
chr6 (145-182)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (145-182)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  152 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 224  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  175 catggagatttggaagaggagatttatatggagcaacc 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  152 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 224  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 28608794 - 28608724
Alignment:
Q  152 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggattt 222  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt 28608724  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  160 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 213  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  145 gagcagttggatgtgaaaactgcatttcttcatggaga 182  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  145 gagcagttggatgtgaaaactgcatttcttcatggaga 182  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  145 gagcagttggatgtgaaaactgcatttcttcatggaga 182  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  145 gagcagttggatgtgaaaactgcatttcttcatggaga 182  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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