View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_49 (Length: 251)
Name: NF11645_high_49
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_49 |
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| [»] scaffold0187 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 37890733 - 37890588
Alignment:
| Q |
19 |
ggaaggtgaaagaattttaattattttgtatttgattcaaaagtttggagtaagacataagttatagaccagtcaagactggggagcataatataaagtc |
118 |
Q |
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| T |
37890733 |
ggaaggtgaaagaattttaattattttgtatttgattcaaaagtttggagtaagacataagttatagaccagtcaagactcgggagcataatataaagtc |
37890634 |
T |
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| Q |
119 |
atgaagctttttcaaaaacatatattaattagaccccttaaccatt |
164 |
Q |
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| T |
37890633 |
atgaagctttttcaaaaacatgtattaattagaccccttaaccatt |
37890588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 37889878 - 37889790
Alignment:
| Q |
164 |
ttgatctattatagctggtcagtaactctagagattaatctatgca-ttgtaccgtaatactttagcttacaaaatatataaatttact |
251 |
Q |
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| T |
37889878 |
ttgatctattgtagctggtcagtaactctagagattaatctatgcagttgtaccggaatactttagcttacaaaatatataaatttact |
37889790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 37872975 - 37872933
Alignment:
| Q |
26 |
gaaagaattttaattattttgtatttgattcaaaagtttggag |
68 |
Q |
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| T |
37872975 |
gaaagaattttaacaattttgtatttgattcaaaagtttggag |
37872933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 9415 - 9506
Alignment:
| Q |
75 |
ataagttatagaccagtcaagactggggagcataatataaagtcatgaagctttttcaaaaacatatattaattagaccccttaaccatttg |
166 |
Q |
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| T |
9415 |
ataagttatagaccagtcaaaactcaatagtataacataaagtcatgaagctttttgaaatacatatattatttaaaccccttaaccatttg |
9506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 19743 - 19834
Alignment:
| Q |
75 |
ataagttatagaccagtcaagactggggagcataatataaagtcatgaagctttttcaaaaacatatattaattagaccccttaaccatttg |
166 |
Q |
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| T |
19743 |
ataagttatagaccagtcaaaactcaatagtataacataaagtcatgaagctttttgaaatacatatattatttaaaccccttaaccatttg |
19834 |
T |
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