View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_high_59 (Length: 240)

Name: NF11645_high_59
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_high_59
NF11645_high_59
[»] chr5 (1 HSPs)
chr5 (18-224)||(35276531-35276737)
[»] chr3 (3 HSPs)
chr3 (114-220)||(8124228-8124334)
chr3 (167-224)||(32366580-32366637)
chr3 (167-224)||(32372289-32372346)
[»] chr8 (3 HSPs)
chr8 (167-222)||(10191070-10191125)
chr8 (167-208)||(411609-411649)
chr8 (167-208)||(18194914-18194954)
[»] chr7 (1 HSPs)
chr7 (112-218)||(5113642-5113739)
[»] chr1 (2 HSPs)
chr1 (114-208)||(26075068-26075152)
chr1 (167-203)||(4957739-4957774)
[»] chr6 (1 HSPs)
chr6 (168-208)||(14321046-14321085)
[»] scaffold1322 (1 HSPs)
scaffold1322 (178-208)||(294-324)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 35276531 - 35276737
Alignment:
Q  18 gacatatgtacgcatgtaatttttgttgtagacaaaactgtggtattttattttcaattattatannnnnnnnaatcatattatttatgtgattcatatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  35276531 gacatatgtacgcatgtaatttttgttgtagacaaaactgtggtattttattttcaattattatattttttttaatcatattatttatgtgattcatatt 35276630  T
Q  118 agcgcagcttatggtttcttgttgtgcaagcaaaactaagaaattagggttagggtttctaatggagaagatgaagttggttatggtggttagaggttgt 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35276631 agcgcagcttatggtttcttattgtgcaagcaaaactaagaaattagggttagggtttctaatggagaagatgaagttggttatggtggttagagattgt 35276730  T
Q  218 tatagat 224  Q
    |||||||    
T  35276731 tatagat 35276737  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 8124228 - 8124334
Alignment:
Q  114 tattagcgcagcttatggtttcttgttgtgcaagcaaaactaagaaattagggttagggtttctaatggagaagatgaagttggttatggtggttagagg 213  Q
    |||||||||||||||||||||  |  || |||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8124228 tattagcgcagcttatggttttctcatgcgcaagcaacactgtgaaattagggttaaggtttctaatggagaagatgaagttggttatggtggttagagg 8124327  T
Q  214 ttgttat 220  Q
    |||||||    
T  8124328 ttgttat 8124334  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 32366580 - 32366637
Alignment:
Q  167 ttagggtttctaatggagaagatgaagttggttatggtggttagaggttgttatagat 224  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  32366580 ttagggtttctaatgaagaagatgaagttggttatggtggttagggtttgttatagat 32366637  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 32372289 - 32372346
Alignment:
Q  167 ttagggtttctaatggagaagatgaagttggttatggtggttagaggttgttatagat 224  Q
    ||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||    
T  32372289 ttagggtttctaatgaaggagatgaagttggttatggtggttagggtttgttatagat 32372346  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 10191125 - 10191070
Alignment:
Q  167 ttagggtttctaatggagaagatgaagttggttatggtggttagaggttgttatag 222  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  10191125 ttagggtttccaacggagaagatgaagttggttatggtggttagaggttgttatag 10191070  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 411649 - 411609
Alignment:
Q  167 ttagggtttctaatggagaagatgaagttggttatggtggtt 208  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  411649 ttagggtttc-aatggagaagatgaagttggttatggaggtt 411609  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 18194954 - 18194914
Alignment:
Q  167 ttagggtttctaatggagaagatgaagttggttatggtggtt 208  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  18194954 ttagggtttc-aatggagaagatgaagttggttatggaggtt 18194914  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 5113739 - 5113642
Alignment:
Q  112 catattagcgcagcttatggtttcttgttgtgcaagcaaaactaagaaattagggttagggtttctaatggagaagatgaagttggttatggtggttaga 211  Q
    |||||||||||||| || |||||||||| |||||||||||||  |||||      |||||||||| |||||||||||||||||||||||||| ||||| |    
T  5113739 catattagcgcagcgtaaggtttcttgtagtgcaagcaaaac--agaaa------ttagggtttc-aatggagaagatgaagttggttatggaggttaaa 5113649  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 26075068 - 26075152
Alignment:
Q  114 tattagcgcagcttatggtttcttgttgtgcaagcaaaactaagaaattagggttagggtttctaatggagaagatgaagttggttatggtggtt 208  Q
    |||||||||||| || |||||||||| ||||||||||||||  |||       |||||||||| |||||||||||||||||||||||||| ||||    
T  26075068 tattagcgcagcgtaaggtttcttgtagtgcaagcaaaact--gaa-------ttagggtttc-aatggagaagatgaagttggttatggaggtt 26075152  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 4957739 - 4957774
Alignment:
Q  167 ttagggtttctaatggagaagatgaagttggttatgg 203  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4957739 ttagggtttc-aatggagaagatgaagttggttatgg 4957774  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 14321046 - 14321085
Alignment:
Q  168 tagggtttctaatggagaagatgaagttggttatggtggtt 208  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  14321046 tagggtttc-aatggagaagatgaagttggttatggtggtt 14321085  T

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Target: scaffold1322 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 294 - 324
Alignment:
Q  178 aatggagaagatgaagttggttatggtggtt 208  Q
    |||||||||||||||||||||||||||||||    
T  294 aatggagaagatgaagttggttatggtggtt 324  T

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