View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_6 (Length: 557)
Name: NF11645_high_6
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Original strand, 41918200 - 41918729
Alignment:
| Q |
17 |
agttatcagaaaatgtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41918200 |
agttatcagaaaatgtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaa |
41918299 |
T |
|
| Q |
117 |
gagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggc |
216 |
Q |
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| T |
41918300 |
gagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggccagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggc |
41918399 |
T |
|
| Q |
217 |
ggaaggaaattctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagnnnnnnntgcatcgaaagaaaaataagagagacgtc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
41918400 |
agaaggaaattctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagaaaaaaatgcatcgaaagaaaaataagagagatgtc |
41918499 |
T |
|
| Q |
317 |
cgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41918500 |
cgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttg |
41918599 |
T |
|
| Q |
417 |
ttgaaaacaaacatgaagagaatgatgaacataagaggaggtattgggagatgataagaaaactctaccataaaatggttatatcattcttagatcaagt |
516 |
Q |
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| T |
41918600 |
ttgaaaacaaacatgaagagaatgatgaacataagaggaggtattgggagatgataagaaaactctaccataaaatggttatatcattcttagatcaagt |
41918699 |
T |
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| Q |
517 |
gcatactgttcaaggtatattttcatctca |
546 |
Q |
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| T |
41918700 |
gcatactgttcaaggtatattttcatctca |
41918729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 17 - 543
Target Start/End: Original strand, 1687076 - 1687605
Alignment:
| Q |
17 |
agttatcagaaaatgtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaa |
116 |
Q |
| |
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||||| || |||||| ||||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||| | || |
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| T |
1687076 |
agttaccaaaaaatgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaa |
1687175 |
T |
|
| Q |
117 |
gagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggc |
216 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||||||||| | |||||||||| |||| ||| |||||| |||||||||| | | || | | |
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| T |
1687176 |
gagaaagaataaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgt |
1687275 |
T |
|
| Q |
217 |
ggaaggaaatt---ctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagnnnnnnntgcatcgaaagaaaaataagagagac |
313 |
Q |
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|||||||||| |||||| |||||||||||||| | || |||||||||| |||||||||| || | ||||||||| |||||||||| | |
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| T |
1687276 |
agaaggaaattctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcaaataaaaaaatacatcgaaaggcaaataagagaaat |
1687375 |
T |
|
| Q |
314 |
gtccgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcg |
413 |
Q |
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||||| ||||| ||||| ||||||||||||||| | || |||| |||| | |||| | ||||||||||||||||||| |||||||| || |||| |
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| T |
1687376 |
gtccgtaaaaaatcaggagaattagttctttatgaacggccattgttgaaagtcaatgtaaagtttgacgaagagacattacgtgtatggaacttgctcg |
1687475 |
T |
|
| Q |
414 |
ttgttgaaaacaaacatgaagagaatgatgaacataagaggaggtattgggagatgataagaaaactctaccataaaatggttatatcattcttagatca |
513 |
Q |
| |
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||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| ||| || ||| |||||| ||| || |
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| T |
1687476 |
ttgctgaaaacaaacatgatgagaaagatgaacataagaggaggtattgggaggagataagaaaagcctatcatgaagctgttgaatcatttttaactcg |
1687575 |
T |
|
| Q |
514 |
agtgcatactgttcaaggtatattttcatc |
543 |
Q |
| |
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|||||||| |||||||||||||||||||| |
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| T |
1687576 |
agtgcataacgttcaaggtatattttcatc |
1687605 |
T |
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