View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_69 (Length: 229)
Name: NF11645_high_69
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44069421 - 44069199
Alignment:
| Q |
1 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggatttcctttttggctttcaagttcggacagaaagcttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| | || || ||||||||||| |
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| T |
44069421 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggattttcatattggctttcagggtcagatagaaagcttct |
44069322 |
T |
|
| Q |
101 |
tcaggcaacaccggggtcagcgacaggaccaagagctgatattgtggttgcacaagatggaagtggaaactataagacgatctcagagggtgttgttgca |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| | |||| |
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| T |
44069321 |
tcaggcaacaccggggtcagggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgca |
44069222 |
T |
|
| Q |
201 |
gctgctaagcttagtagaaaagg |
223 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
44069221 |
gctgctaagcttagtggaaaagg |
44069199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44094670 - 44094448
Alignment:
| Q |
1 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggatttcctttttggctttcaagttcggacagaaagcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | || || ||||||||||| |
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| T |
44094670 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttct |
44094571 |
T |
|
| Q |
101 |
tcaggcaacaccggggtcagcgacaggaccaagagctgatattgtggttgcacaagatggaagtggaaactataagacgatctcagagggtgttgttgca |
200 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| | |||| |
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| T |
44094570 |
tcaggcaacaccggggtcagggataggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgca |
44094471 |
T |
|
| Q |
201 |
gctgctaagcttagtagaaaagg |
223 |
Q |
| |
|
||||||||||||||| ||||||| |
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| T |
44094470 |
gctgctaagcttagtggaaaagg |
44094448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 44085781 - 44085995
Alignment:
| Q |
1 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggatttcctttttggctttcaagttcggacagaaagcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | || || ||||||||||| |
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| T |
44085781 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttct |
44085880 |
T |
|
| Q |
101 |
tcaggcaacaccggggtcagcgacaggaccaagagctgatattgtggttgcacaagatggaagtggaaactataagacgatctcagagggtgttgttgca |
200 |
Q |
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|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || || ||||| | |||| |
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| T |
44085881 |
tcaggcaacaccgggttcagggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgacggtgtggctgca |
44085980 |
T |
|
| Q |
201 |
gctgctaagcttagt |
215 |
Q |
| |
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||||||||||||||| |
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| T |
44085981 |
gctgctaagcttagt |
44085995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44085684 - 44085748
Alignment:
| Q |
1 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggattt |
65 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44085684 |
catcctcatcctcatcatcaagtactaagcaaaacggagggagaaggttgttatcagatggattt |
44085748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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