View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_high_7 (Length: 542)

Name: NF11645_high_7
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_high_7
NF11645_high_7
[»] chr1 (5 HSPs)
chr1 (23-300)||(10008425-10008703)
chr1 (330-393)||(17726049-17726113)
chr1 (333-394)||(14184705-14184767)
chr1 (330-371)||(22368195-22368236)
chr1 (330-387)||(31771354-31771411)
[»] chr4 (6 HSPs)
chr4 (330-527)||(3649888-3650085)
chr4 (348-481)||(26720260-26720393)
chr4 (330-390)||(38467687-38467748)
chr4 (359-481)||(14586743-14586865)
chr4 (330-393)||(32651243-32651307)
chr4 (325-394)||(41810183-41810253)
[»] chr6 (6 HSPs)
chr6 (330-527)||(33053994-33054200)
chr6 (348-476)||(27444150-27444278)
chr6 (55-147)||(6609532-6609624)
chr6 (330-407)||(31444788-31444865)
chr6 (58-201)||(14560497-14560640)
chr6 (69-137)||(17177525-17177593)
[»] scaffold0003 (2 HSPs)
scaffold0003 (330-476)||(36899-37045)
scaffold0003 (348-476)||(43083-43211)
[»] chr3 (3 HSPs)
chr3 (326-476)||(31687883-31688033)
chr3 (325-394)||(19766026-19766095)
chr3 (325-394)||(52130801-52130871)
[»] scaffold0152 (1 HSPs)
scaffold0152 (330-416)||(10212-10298)
[»] chr8 (3 HSPs)
chr8 (330-408)||(19962047-19962125)
chr8 (325-390)||(35349003-35349069)
chr8 (330-407)||(44663643-44663720)
[»] chr2 (2 HSPs)
chr2 (330-407)||(4453795-4453872)
chr2 (98-138)||(25553248-25553288)
[»] scaffold0005 (1 HSPs)
scaffold0005 (359-481)||(230509-230631)
[»] chr7 (2 HSPs)
chr7 (330-390)||(21820151-21820211)
chr7 (330-371)||(7841304-7841345)
[»] scaffold0236 (1 HSPs)
scaffold0236 (74-147)||(12684-12757)
[»] chr5 (3 HSPs)
chr5 (72-146)||(41748268-41748342)
chr5 (101-146)||(10117971-10118016)
chr5 (101-146)||(34082504-34082549)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 10008703 - 10008425
Alignment:
Q  23 ggagattgtaaaatgatatatgatgcactggatttgatcctctatagtgagaatttcactggatggtgtgcaggatagatctaaacctttaattaccctc 122  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||| || |||||||| || ||||||||||||||    
T  10008703 ggagattgtaaaatgatatacgatgcactggatttgatcctttatagtgagaattttactggacggtgtgtagtatagatctgaaactttaattaccctc 10008604  T
Q  123 ttaataattataaatgtttgcaatgnnnnnnnttaaatggagcagatttcactggactctctgatcataggagagaatctgctcccatgatgtatcaaaa 222  Q
    |||||||||||||||||||||||||       ||||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  10008603 ttaataattataaatgtttgcaatgaaaaaaattaaaaggagcagatttcactggactatccggtcataggagagaatctgctcccatgatgtatcaaaa 10008504  T
Q  223 gttacaccaaaaaattgttt-attcttttcttaaatggtaaagatggtgattgcaatgataatacatttaagtactttt 300  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10008503 gttacacccaaaaattgtttgattcttttcttaaatggtaaagatggtgattgcaatgataatacatttaagtattttt 10008425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 17726049 - 17726113
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatc 393  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |  |||||||||||||| |||||    
T  17726049 tcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaatc 17726113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 14184705 - 14184767
Alignment:
Q  333 tagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatcc 394  Q
    |||||||||||| ||||| |||||||||| |||| ||| |  |||||||||||||||||||||    
T  14184705 tagttaacactctaattaccacttaaaactctaattctaagatttttaggcgccaatcaatcc 14184767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 22368236 - 22368195
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatcta 371  Q
    |||||||||||||| |||||| ||||||||||||||| ||||    
T  22368236 tcctagttaacacttcaattatcacttaaaaccctaattcta 22368195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 31771411 - 31771354
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 387  Q
    |||||||||||||||||| |||||||   |||||||| ||| || |||||||||||||    
T  31771411 tcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaa 31771354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 330 - 527
Target Start/End: Original strand, 3649888 - 3650085
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3649888 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgccgcttaa 3649987  T
Q  430 ttatgagtcctacatctgatcttgcttatggctagcacaaatcacaacacacggaaaatttccctccttgccttacgccacataatgcagtctgtgct 527  Q
    ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649988 ttatgaaccctacatctgatcttgtttatggctagcacaaatcacaacacacggaaaatttccctccttgccttacgccacataatgcagtctgtgct 3650085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 481
Target Start/End: Original strand, 26720260 - 26720393
Alignment:
Q  348 ttaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaattatgagtcctacatctg 447  Q
    ||||||||  |||||||||  ||||||||||||||||||| |||||||| |||||||||| ||| |||||||  |  |||| |||| || | || ||||     
T  26720260 ttaacactccaaaccctaatcctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcaccacttatttatcagccatagatcta 26720359  T
Q  448 atcttgcttatggctagcacaaatcacaacacac 481  Q
    ||||||||  ||||||||||||||||||| ||||    
T  26720360 atcttgctgttggctagcacaaatcacaatacac 26720393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 38467748 - 38467687
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctactt-ttttaggcgccaatca 390  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  38467748 tcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaatca 38467687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 481
Target Start/End: Complemental strand, 14586865 - 14586743
Alignment:
Q  359 aaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaattatgagtcctacatctgatcttgcttat 458  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||  |||| |||| || | || ||||||||||  |  |    
T  14586865 aaccctaaacctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccgtagatctgatctttttgct 14586766  T
Q  459 ggctagcacaaatcacaacacac 481  Q
    | |||||||||||||||| ||||    
T  14586765 gactagcacaaatcacaatacac 14586743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 32651307 - 32651243
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatc 393  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |  |||||||||||||| |||||    
T  32651307 tcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaatc 32651243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 41810183 - 41810253
Alignment:
Q  325 tctagtcctagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatcc 394  Q
    |||| ||||||||||||||||||||| ||||||||||||||| | | |  |||||| ||||||||||||||    
T  41810183 tctaatcctagttaacactccaattaccacttaaaaccctaattttaagatttttaagcgccaatcaatcc 41810253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 330 - 527
Target Start/End: Complemental strand, 33054200 - 33053994
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaa 429  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||    
T  33054200 tcctaattaacactacaattaacacttaaaaccctaaacctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggcaccacttaa 33054101  T
Q  430 ttatgagtcctacatctgatcttgcttatggctagcacaaatcacaacacacggaaaa---------tttccctccttgccttacgccacataatgcagt 520  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||||     
T  33054100 ttatgagccctacatctaatcttgcttatggctagcacaaatcacaacacacggaaaattttcaaattttccctccttaccttacgccacataatgcaga 33054001  T
Q  521 ctgtgct 527  Q
    |||||||    
T  33054000 ctgtgct 33053994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 476
Target Start/End: Original strand, 27444150 - 27444278
Alignment:
Q  348 ttaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaattatgagtcctacatctg 447  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||  |||| |||| || | || |||||    
T  27444150 ttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccatagatctg 27444249  T
Q  448 atcttgcttatggctagcacaaatcacaa 476  Q
    ||||||||  ||||| |||||||||||||    
T  27444250 atcttgctgctggctggcacaaatcacaa 27444278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 6609532 - 6609624
Alignment:
Q  55 tttgatcctctatagtgagaatttcactggatggtgtgcaggatagatctaaacctttaattaccctcttaataattataaatgtttgcaatg 147  Q
    ||||||||||| |||||||||||| |||||||| | |||||  ||||||| |||||||||||||||| || |||||||||||||  |||||||    
T  6609532 tttgatcctctctagtgagaattttactggatgctctgcagtgtagatctgaacctttaattacccttttcataattataaatgcctgcaatg 6609624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 31444788 - 31444865
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatc 407  Q
    |||||||||||||||||||||  |||||||||||||| ||||   ||||||||||||||||||  || ||||||||||    
T  31444788 tcctagttaacactccaattactacttaaaaccctaattctataattttaggcgccaatcaatattagcccttggatc 31444865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 14560640 - 14560497
Alignment:
Q  58 gatcctctatagtgagaatttcactggatggtgtgcaggatagatctaaacctttaattaccctcttaataattataaatgtttgcaatgnnnnnnntta 157  Q
    ||||||||  |||||||||||||||||||| | |||||   | |||||||| |||||||||| | |||||||||||||||  |||||||        |||    
T  14560640 gatcctctccagtgagaatttcactggatgctctgcagtgaaaatctaaacttttaattacctttttaataattataaatacttgcaataaaaaaaatta 14560541  T
Q  158 aatggagcagatttcactggactctctgatcataggagagaatc 201  Q
    ||||| | |||| | |||||||||||  |||| |||||||||||    
T  14560540 aatggtgaagatcttactggactctccaatcacaggagagaatc 14560497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 17177593 - 17177525
Alignment:
Q  69 gtgagaatttcactggatggtgtgcaggatagatctaaacctttaattaccctcttaataattataaat 137  Q
    |||| |||||||||||||  ||||| |  ||||||| || |||||| |||||| |||||||||||||||    
T  17177593 gtgaaaatttcactggattctgtgcggtgtagatctgaaactttaaatacccttttaataattataaat 17177525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 476
Target Start/End: Complemental strand, 37045 - 36899
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaa 429  Q
    ||||| ||||||||||||||||||||| ||| ||||| ||| |||||||||||||||| |||||||| |||||||||| ||| |||||| |||  ||||     
T  37045 tcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcctagcccttggatctacacctttggttgccacttat 36946  T
Q  430 ttatgagtcctacatctgatcttgcttatggctagcacaaatcacaa 476  Q
    |||| || | || ||||||||||||| ||||||||||||||||||||    
T  36945 ttatcagccatagatctgatcttgctgatggctagcacaaatcacaa 36899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 476
Target Start/End: Complemental strand, 43211 - 43083
Alignment:
Q  348 ttaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaattatgagtcctacatctg 447  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||  |||| |||| || | || |||||    
T  43211 ttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccatagatctg 43112  T
Q  448 atcttgcttatggctagcacaaatcacaa 476  Q
    ||||||||  ||||| |||||||||||||    
T  43111 atcttgctgctggcttgcacaaatcacaa 43083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 326 - 476
Target Start/End: Original strand, 31687883 - 31688033
Alignment:
Q  326 ctagtcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgc 425  Q
    |||||||||||||||||||||| | |||||  ||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||  |    
T  31687883 ctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccac 31687982  T
Q  426 ttaattatgagtcctacatctgatcttgcttatggctagcacaaatcacaa 476  Q
    ||| |||| || | || |||||||||||||  |||||||||||||||||||    
T  31687983 ttatttatcagccatagatctgatcttgctgctggctagcacaaatcacaa 31688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 19766026 - 19766095
Alignment:
Q  325 tctagtcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcc 394  Q
    |||| ||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||| ||||||    
T  19766026 tctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 19766095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 52130801 - 52130871
Alignment:
Q  325 tctagtcctagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatcc 394  Q
    |||| |||||| |||||||||||||| ||||||||||||||| ||| |  |||||||||||||||||||||    
T  52130801 tctaatcctaggtaacactccaattaccacttaaaaccctaattctaagatttttaggcgccaatcaatcc 52130871  T

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Target: scaffold0152 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 330 - 416
Target Start/End: Original strand, 10212 - 10298
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatcttt 416  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||    
T  10212 tcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacaccttt 10298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 19962047 - 19962125
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatca 408  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| | ||| || ||||||||    
T  19962047 tcctagttaacactcaaattaacacttaaaaccctaattttacttttttaggcgccaatcagtactagccattggatca 19962125  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 35349003 - 35349069
Alignment:
Q  325 tctagtcctagttaacactccaattaacacttaaaaccctaaatctactt-ttttaggcgccaatca 390  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  35349003 tctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaatca 35349069  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 44663720 - 44663643
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatc 407  Q
    ||||||||||||||||||||| ||||||||||||||| ||||   ||||||||||||||||||  || ||||||||||    
T  44663720 tcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaatcaatattagcccttggatc 44663643  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 4453795 - 4453872
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatc 407  Q
    ||||||||||||||||||||| ||||||||||||||| ||||   ||||||||||||||||||  |||||||||||||    
T  4453795 tcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaatcaatattaacccttggatc 4453872  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 25553248 - 25553288
Alignment:
Q  98 tagatctaaacctttaattaccctcttaataattataaatg 138  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  25553248 tagatctaaacctttaattacccttttaataattataaatg 25553288  T

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Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 481
Target Start/End: Original strand, 230509 - 230631
Alignment:
Q  359 aaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgctgcttaattatgagtcctacatctgatcttgcttat 458  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||  |||| |||| || | || ||||||||||  |  |    
T  230509 aaccctaaacctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccgtagatctgatctttttgct 230608  T
Q  459 ggctagcacaaatcacaacacac 481  Q
    | |||||||||||||||| ||||    
T  230609 gactagcacaaatcacaatacac 230631  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 21820211 - 21820151
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaatca 390  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  21820211 tcctaattaacactccaattaacacttaaaaccataattctacatttttaggcgccaatca 21820151  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 7841304 - 7841345
Alignment:
Q  330 tcctagttaacactccaattaacacttaaaaccctaaatcta 371  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||    
T  7841304 tcctagttaacactctaattaccacttaaaaccctaattcta 7841345  T

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Target: scaffold0236 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 12684 - 12757
Alignment:
Q  74 aatttcactggatggtgtgcaggatagatctaaacctttaattaccctcttaataattataaatgtttgcaatg 147  Q
    |||||||||||||  | |||||  ||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  12684 aatttcactggatactctgcagtgtagatctgaacctttaattacccttttaataattataaatgtttgaaatg 12757  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 41748268 - 41748342
Alignment:
Q  72 agaatttcactggatggtgtgcaggatagatctaaacctttaattaccctcttaataattataaatgtttgcaat 146  Q
    |||||||||||||||| | || ||   | ||||||||||||||||||||| |||||||||||||||| |||||||    
T  41748268 agaatttcactggatgctctggagtgaaaatctaaacctttaattacccttttaataattataaatgcttgcaat 41748342  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 10117971 - 10118016
Alignment:
Q  101 atctaaacctttaattaccctcttaataattataaatgtttgcaat 146  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||    
T  10117971 atctgaacctttaattacccttttaataattataaatgcttgcaat 10118016  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 34082504 - 34082549
Alignment:
Q  101 atctaaacctttaattaccctcttaataattataaatgtttgcaat 146  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||||    
T  34082504 atctaaacctttaattacccttttaataattattaatgcttgcaat 34082549  T

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