View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_high_9 (Length: 497)
Name: NF11645_high_9
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 23 - 318
Target Start/End: Original strand, 23190371 - 23190665
Alignment:
| Q |
23 |
actgcatcccttccaagtccaaagccaccagcatttcaaaatgtgagaggtattgaatatacaagactacctaaacgcatagaagaaaacatttctgtga |
122 |
Q |
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| T |
23190371 |
actgcatcccttccgattccaaagccaccagcatttcaaaacgtgagaggtattgaatattcaagactctcaaaaagcatagaaggaaacatttctctga |
23190470 |
T |
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| Q |
123 |
atggcatcacagattccctcattgaagcaagatgagttttgagagtgatttcgctagctgtaagaattgaatacttgcttgtttgcgtaacattgaaaaa |
222 |
Q |
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| T |
23190471 |
atggcatcacagattcactcattgaagcaagatgagtttt-agagtgacttcgctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaa |
23190569 |
T |
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| Q |
223 |
acttgtgtcaatgctactgttatttctttcctttatctacttcaatgttgttttagtaaaatctgtcaaggataatcataaggagaataaaatttg |
318 |
Q |
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| T |
23190570 |
acttgtgtcaatgctactattatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaggataatcattaggagaataaaatttg |
23190665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 316
Target Start/End: Original strand, 23182995 - 23183293
Alignment:
| Q |
23 |
actgcatcccttccaagtccaaagccaccagcatttcaaaatgtgagaggtattgaatatacaagactacctaaacgcatagaagaaaacatttctgtga |
122 |
Q |
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| T |
23182995 |
actgcatcgcttccgattccaaagccaccagcatttcaaaatgtgagaggcattaaaagttcaagactctcaaaaagcatagaaggaaacatttctgtga |
23183094 |
T |
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| Q |
123 |
atggcatcacagattccctcattgaagcaagatgagttttgagagtgatttcg---ctagctgtaagaattgaatacttgcttgtttgcgtaacattgaa |
219 |
Q |
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| T |
23183095 |
atggcatcacagattcagtcattgaagcaagatgagtttt-agagtgacgacgtcactatctgtaagaattgaatacttacttgtttgggtaacattgaa |
23183193 |
T |
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| Q |
220 |
aaaacttgtgtcaatgctactgttat---ttctttcctttatctacttcaatgttgttttagtaaaatctgtcaaggataatcataaggagaataaaatt |
316 |
Q |
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| T |
23183194 |
caaacttgtgtcaatgctactattataatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaggataatcattaggagaataaaatt |
23183293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 21179652 - 21179518
Alignment:
| Q |
27 |
catcccttccaagtccaaagccaccagcatttcaaaatgtgagaggtattgaatatacaagactacctaaacgcatagaagaaaacatttctgtgaatgg |
126 |
Q |
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| T |
21179652 |
catcccttcttagtccaaagccaccggcatttcaaaatgtgagaggtattgaaaattcaagactctctagaagcatagaagaaaacgtttctgtgaatgt |
21179553 |
T |
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| Q |
127 |
catcacagattccctcattgaagcaagatgagttt |
161 |
Q |
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| T |
21179552 |
tgtcacaaattcactagttgaagcaagatgagttt |
21179518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 39649435 - 39649503
Alignment:
| Q |
332 |
tgatgcaaataagattttggattaaat-tattttgacgatgttgtgttattggacactacatattgtac |
399 |
Q |
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| T |
39649435 |
tgatgcaaatatgattttggattacgtgtattttggtgatgttgtttcattggacaccacatattgtac |
39649503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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