View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11645_low_1 (Length: 673)
Name: NF11645_low_1
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 16 - 656
Target Start/End: Complemental strand, 31858957 - 31858317
Alignment:
| Q |
16 |
ggacatcaggcggtggatgctctaaatggcatgcctggtgttgaaagaaacacaataacatctcaaactgagattctatgtttcccttcatatgacttga |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31858957 |
ggacaacaggcggtggatgctctaaatggcatgcctggtgttgaaagaaacacaataacatctcaaactgagattctaagtttcccttcatatgacttga |
31858858 |
T |
|
| Q |
116 |
tcctaatggattgtcaggtatgtttgtaaaatatgtaatgctttactctgaatagatttgcaccttgtttggataaacacttcttttttgtttgaatttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31858857 |
tcctaatggattgtcaggtatgtttgtaaaatatgtaatgctttactctgaatagatttgcaccttgtttggataaacacttcttttttgtttgaatttt |
31858758 |
T |
|
| Q |
216 |
ctgatttcttgtgtttgtgaaataaagcagatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaaattggaacttcattccaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31858757 |
ctgatttcttgtgtttgtgaaataaagcagatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaaattggaacttcattccaca |
31858658 |
T |
|
| Q |
316 |
ttccaatcgtcgctcttacggctcatgcaatgtcatgtgatgaagccaaatgtttagaagtgggcatggatgcttatttaaccaagccaattgactttaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31858657 |
ttccaatcgtcgctcttacggctcatgcaatgtcatgtgatgaagccaaatgtttagaagtgggcatggatgcttatttaaccaagccaattgactttaa |
31858558 |
T |
|
| Q |
416 |
gctgatggagtctaccattctttcactcacaaagagagaaaccttgacatcttaacaatgatgatgctaactaaggattggtcctgtatagcttataaaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31858557 |
gctgatggagtctaccattctttcactcacaaagagagaaaccttgacatcttaacaatgatgatgctaactaaagattggtcctgtatagcttataaaa |
31858458 |
T |
|
| Q |
516 |
tataaagggaaaaagttctcacctcccaacatgagttcgaatgtatacatatataaataacactaattttgtgtcatccgaaagtgtacttctgaacaaa |
615 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
31858457 |
tataaatggaaaaagttctcacctcccaacatgagttcgaatgtatacatctataaataacactaattttgtgtcgtccggaagtgtacttctgaacaaa |
31858358 |
T |
|
| Q |
616 |
aaattttcgtacgaatgtatatttctagaaacatacaaaat |
656 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31858357 |
tttttttcgtacaaatgtatatttctagaaacatacaaaat |
31858317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 445
Target Start/End: Original strand, 8870605 - 8870806
Alignment:
| Q |
244 |
agatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaaattggaacttcattccacattccaatcgtcgctcttacggctcatgc |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| || ||||| || || ||||| |
|
|
| T |
8870605 |
agatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaggaaggaacaggaaaacacattccaattgttgctctaacagcccatgc |
8870704 |
T |
|
| Q |
344 |
aatgtcatgtgatgaagccaaatgtttagaagtgggcatggatgcttatttaaccaagccaattgactttaagctgatggagtctaccattctttcactc |
443 |
Q |
| |
|
|||||| ||||||||||||||||| | | || |||||||||||||| ||||| |||||||||||||| ||||| |||| || |||||||| |||||| |
|
|
| T |
8870705 |
aatgtcttgtgatgaagccaaatgccttaaggttggcatggatgcttacttaacaaagccaattgacttcaagcttatggtctcaaccattctctcactc |
8870804 |
T |
|
| Q |
444 |
ac |
445 |
Q |
| |
|
|| |
|
|
| T |
8870805 |
ac |
8870806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 8870418 - 8870450
Alignment:
| Q |
105 |
atatgacttgatcctaatggattgtcaggtatg |
137 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
8870418 |
atatgatttgatcctaatggattgtcaggtatg |
8870450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University