View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_low_11 (Length: 488)

Name: NF11645_low_11
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_low_11
NF11645_low_11
[»] chr8 (1 HSPs)
chr8 (20-477)||(32525737-32526194)
[»] chr1 (9 HSPs)
chr1 (20-477)||(6838385-6838842)
chr1 (171-477)||(2797341-2797647)
chr1 (24-320)||(8977136-8977426)
chr1 (336-477)||(8977478-8977619)
chr1 (36-313)||(6385041-6385315)
chr1 (36-322)||(28600206-28600498)
chr1 (324-454)||(28600536-28600666)
chr1 (359-475)||(6384839-6384955)
chr1 (159-240)||(26401696-26401777)
[»] chr5 (3 HSPs)
chr5 (24-325)||(20082918-20083217)
chr5 (321-438)||(20083249-20083366)
chr5 (159-240)||(17794185-17794266)
[»] chr3 (2 HSPs)
chr3 (24-319)||(2802958-2803250)
chr3 (359-447)||(2802795-2802883)
[»] chr2 (2 HSPs)
chr2 (336-477)||(13812229-13812373)
chr2 (255-322)||(13812423-13812490)
[»] chr6 (1 HSPs)
chr6 (159-240)||(7034765-7034846)
[»] chr4 (1 HSPs)
chr4 (159-240)||(1542063-1542144)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 32526194 - 32525737
Alignment:
Q  20 gttggtacaaccactatcaatcagtcaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcttactcttcctcttgatcaaca 119  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  32526194 gttggtacaaccactatcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaaca 32526095  T
Q  120 acctttgcctcatcattatgttgttgtttcctatttttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctcc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||| |||||||    
T  32526094 acctttgcctcatcattatgttgttgattcctatttttacaaatatcagcttcatgccccatttgattacacttggtacacttagcatcaggtcttctcc 32525995  T
Q  220 aacatctaaagggtggatgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctgatgttga 319  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32525994 aacatcttaagggtggatgacctttctttccatagtgttgacatggaggataagattttcttcgaattacattcttttctgttgcattggctgatgttga 32525895  T
Q  320 gcccacattctgctgtttggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattct 419  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32525894 acccacattctgctgcttggctgctaatgctccttcaagtgttgtttcctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattct 32525795  T
Q  420 gccaaagaaatttttgagagatctttggtattctccaaagtagtgatggttgcttcat 477  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32525794 gcaaaagaaatttttgagaaatctttggtattctccaaagtagtgatggttgcttcat 32525737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Original strand, 6838385 - 6838842
Alignment:
Q  20 gttggtacaaccactatcaatcagtcaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcttactcttcctcttgatcaaca 119  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  6838385 gttggtacaaccactatcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaaca 6838484  T
Q  120 acctttgcctcatcattatgttgttgtttcctatttttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctcc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| |||||||    
T  6838485 acctttgcctcatcattatgttgttgattcctatttttacaaataacagcttcatgccccatttgattacacttggtacacttagcatcaggtcttctcc 6838584  T
Q  220 aacatctaaagggtggatgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctgatgttga 319  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6838585 aacatctaaagggtggatgacctttctttccacagtgttgacgtggaggataagattttcttcgaattgcattcttttctgttgcattggctgatgttga 6838684  T
Q  320 gcccacattctgctgtttggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattct 419  Q
     |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838685 acccacattctgctacatggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattct 6838784  T
Q  420 gccaaagaaatttttgagagatctttggtattctccaaagtagtgatggttgcttcat 477  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6838785 gcaaaagaaatttttgagaaatctttggtattctccaaagtagtgatggttgcttcat 6838842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 171 - 477
Target Start/End: Original strand, 2797341 - 2797647
Alignment:
Q  171 tcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaaagggtggatgacatttctttccacagtgttgacatggaggat 270  Q
    |||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2797341 tcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgttgacatggaggat 2797440  T
Q  271 aagattttcttcgaattacattattttctgttgcattggctgatgttgagcccacattctgctgtttggctgctaatgctccttcaagtgttgtttcctc 370  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  2797441 aagattttcttcgaattacattcttttctgttgcattggctgatgttgagcccacattatgctgcttggctgctaatgctccttcaagtgttgtttcctc 2797540  T
Q  371 tctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctgccaaagaaatttttgagagatctttggtattctccaaagtagtgatggtt 470  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2797541 tctcatcaatcttctctgttctagtgccttcaatgcattaagcaattctgccaaagaaatttttgagaaatctttggtattctccaaagtagtgatggtt 2797640  T
Q  471 gcttcat 477  Q
    |||||||    
T  2797641 gcttcat 2797647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 320
Target Start/End: Original strand, 8977136 - 8977426
Alignment:
Q  24 gtacaaccactatcaatcagtcaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcttactcttcctcttgatcaacaacct 123  Q
    ||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||||    
T  8977136 gtacaaccactgtcaatcagccaattctcatttgatttgatgctagagaaacatgttgcaacgaataagtgatcctcatcttccttttgatcaacaacct 8977235  T
Q  124 ttgcctcatcattatgttgttgtttcctatttttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaaca 223  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||  |||||||||      || |||||||||| ||| |||||||||||    
T  8977236 ttgcctcatcaatatcttgttgattcctatttttacaaataacaacttcatgccccatttgatta------gtgcacttagcatcaggtcttctccaaca 8977329  T
Q  224 tctaaagggtggatgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctgatgttgag 320  Q
    ||||||||||||||||| ||| |||||||| |||||| |||| | ||||||||||||| ||||| |||| ||||||||||||||||||||| |||||    
T  8977330 tctaaagggtggatgacctttttttccacaatgttgaaatggcgtataagattttctttgaatttcattcttttctgttgcattggctgattttgag 8977426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 336 - 477
Target Start/End: Original strand, 8977478 - 8977619
Alignment:
Q  336 ttggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctgccaaagaaatttttg 435  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||  |||||     
T  8977478 ttggctgctaatgctccttcaagtgttgtttcttctttcatcaatcttctatgttcttgccccttcaatgcattaagcaattctgccaaagatttttttt 8977577  T
Q  436 agagatctttggtattctccaaagtagtgatggttgcttcat 477  Q
    ||| |||| |||||||||| ||||||||||||||| ||||||    
T  8977578 agaaatctctggtattctctaaagtagtgatggttacttcat 8977619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 36 - 313
Target Start/End: Complemental strand, 6385315 - 6385041
Alignment:
Q  36 tcaatcagtcaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcttactcttcctcttgatcaacaacctttgcctcatcat 135  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||| ||| |||| | | | |||||| ||||| |||| || |||| |||  |||     
T  6385315 tcaatcaatcaattctcacttgattcgatgttagagaaacatgtcgcaatgaacaagtcacccttctcttcttcttgttcaataatcttttcctg-tcac 6385217  T
Q  136 tatgttgttgtttcctatttttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaaagggtgg 235  Q
    || ||||||| ||| |||||| |||  ||| |||||||||||  ||||||||||||||||| | |||| ||| ||| |||||||||| |||||| |||||    
T  6385216 tacgttgttgattcttattttcacatgtaatagcttcatgccctatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgg 6385117  T
Q  236 atgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctga 313  Q
     |||| ||||||||  |||||| |||| ||| |  ||||||||||||||||| ||||||||||| || ||||||||||    
T  6385116 gtgacctttctttc--cagtgtagacaaggaagtgaagattttcttcgaatttcattattttcttttacattggctga 6385041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 36 - 322
Target Start/End: Original strand, 28600206 - 28600498
Alignment:
Q  36 tcaatcagtcaattctcacttgattcgatgctagagaaacatg----ttgcaacgaataagtgatcttactc---ttcctcttgatcaacaacctttgcc 128  Q
    ||||| || |||||||||||||||||||| |||||||||||||    |||||  ||| |||||||| | |||   ||| ||||||||| || |  |||||    
T  28600206 tcaattagccaattctcacttgattcgattctagagaaacatgcattttgcattgaacaagtgatcctcctcctcttcttcttgatca-catcacttgcc 28600304  T
Q  129 tcatcattatgttgttgtttcctatttttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaa 228  Q
    |||||| |||||||||| |||||||| | | | |||| ||||||||| |  |||||| || || | || |||||||||||  |  ||||||||||| |||    
T  28600305 tcatcactatgttgttgattcctattctgaaatataagagcttcatgtctcatttgactagacatagtgcacttagcatttcgttttctccaacatttaa 28600404  T
Q  229 agggtggatgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctgatgttgagcc 322  Q
    | | ||||||||||||||||||||| | |||  | || |||||||||||||||| |||| |||| |||||| |||| || ||||||||||||||    
T  28600405 atgatggatgacatttctttccacaatattggaaaggtggataagattttcttcaaatttcattcttttcttttgctttcgctgatgttgagcc 28600498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 454
Target Start/End: Original strand, 28600536 - 28600666
Alignment:
Q  324 acattctgctgtttggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctgcca 423  Q
    ||||| ||||| ||||||||| | |||||||    |||||| |||||||||||||||||||| ||||||||  |||||||||  |||| ||||||| |||    
T  28600536 acattttgctgattggctgctgaagctcctttcgttgttgtgtcctctctcatcaatcttctatgttcttgcaccttcaatggtttaatcaattcttcca 28600635  T
Q  424 aagaaatttttgagagatctttggtattctc 454  Q
    |||| |||||||| | ||| |||||||||||    
T  28600636 aagatatttttgaaaaatccttggtattctc 28600666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 6384955 - 6384839
Alignment:
Q  359 tgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctgccaaagaaatttttgagagatctttggtattctccaaa 458  Q
    ||||||||||||||||||   |||| ||| |||||||| |||||||||||||||| ||| || ||||||| ||||||||| ||  ||||||||||  ||     
T  6384955 tgttgtttcctctctcatacgtcttatctattcttgtgtcttcaatgcattaagctattttgtcaaagaactttttgagaaattcttggtattcttaaac 6384856  T
Q  459 gtagtgatggttgcttc 475  Q
    |||||||||||| ||||    
T  6384855 gtagtgatggttacttc 6384839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 26401777 - 26401696
Alignment:
Q  159 caaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaaagggtggatgac 240  Q
    ||||| ||||||||||| | |||||| ||||||||| | || || |||||||| |  |||||||||||||| || |||||||    
T  26401777 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgac 26401696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 20082918 - 20083217
Alignment:
Q  24 gtacaaccactatcaatcagtcaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcttactcttcctcttgatcaacaacct 123  Q
    ||||||||| | |||||||  |||||||  |||||||| | ||||||||||||| ||||||| ||||||||||| | |||||| |||| || |||||| |    
T  20082918 gtacaaccattgtcaatcaaccaattctatcttgattcaaagctagagaaacatcttgcaacaaataagtgatcctcctcttcttcttcattaacaacat 20083017  T
Q  124 ttgcctcatcattatgttgttgtttcctatttttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaaca 223  Q
    |||| |||||| || ||||||| || | |||||||||||||| |||||||| ||  ||||| |||||||| ||||||||||||||| | | || ||||||    
T  20083018 ttgcgtcatcactaagttgttgatttc-atttttacaaataatagcttcattcctcatttggttacacttagtacacttagcattatgtcatccccaaca 20083116  T
Q  224 tctaaagggtggatgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctgatgttgagccc 323  Q
    ||||||||||| || || |||||| || ||||||| ||| ||||||| | | |||||||||||| |||| |||||| ||| | |||||||||| || |||    
T  20083117 tctaaagggtgaattacctttcttccctcagtgttaacagggaggat-acaatttcttcgaatttcattcttttctcttgtagtggctgatgtcgatccc 20083215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 438
Target Start/End: Original strand, 20083249 - 20083366
Alignment:
Q  321 cccacattctgctgtttggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctg 420  Q
    ||||||||  |||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||| |||||| ||||||||| |     
T  20083249 cccacatttggctgcttggatgctaatgctccttcaaatgttgtttcctctctcattaatcttctctcttcttgcgcctttaatgcaataagcaattatt 20083348  T
Q  421 ccaaagaaatttttgaga 438  Q
     |||||||| | ||||||    
T  20083349 tcaaagaaaatattgaga 20083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 17794266 - 17794185
Alignment:
Q  159 caaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaaagggtggatgac 240  Q
    ||||| ||||||||||| | |||||| ||||||||| | || || |||||||| |  |||||||||||||| || |||||||    
T  17794266 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgac 17794185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 2803250 - 2802958
Alignment:
Q  24 gtacaaccactatcaatcagtcaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcttactcttcctcttgatcaacaacct 123  Q
    ||||||||||| | ||| |  ||||||||||||||||||||||||||||||||||||| ||| || |||| |||   ||| ||||||||| ||||| |||    
T  2803250 gtacaaccactgttaataaaccaattctcacttgattcgatgctagagaaacatgttgtaacaaacaagtaatc---ctcctcctcttgaccaacatcct 2803154  T
Q  124 ttgcctcatcattatgttgttgtttcctattt-ttacaaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaac 222  Q
    ||||| ||||| ||| |||||| ||| | ||| ||||| |||||| ||||| | |  ||||||||||||   |  |||||||||| ||| |||||||| |    
T  2803153 ttgccccatcactattttgttgattcttttttcttacatataacaacttcacgtcccatttgattacacaatg--cacttagcatcaggtcttctccacc 2803056  T
Q  223 atctaaagggtggatgacatttctttccacagtgttgacatggaggataagattttcttcgaattacattattt-tctgttgcattggctgatgttga 319  Q
     | |||| |||| ||||| |||||||||||| |||||||| || ||||||||||||| ||||||| |||| ||| | | |||||||||||||||||||    
T  2803055 ctataaatggtgaatgacctttctttccacaatgttgacaaggtggataagattttcatcgaatttcattctttatgttttgcattggctgatgttga 2802958  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 2802883 - 2802795
Alignment:
Q  359 tgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctgccaaagaaatttttgagagatctttgg 447  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  2802883 tgttgtgtcctctctcatcaatcttccatgttcttgcgccttcaatgcattaagcaattctaccaaagaaatttttgagaaatccttgg 2802795  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 477
Target Start/End: Complemental strand, 13812373 - 13812229
Alignment:
Q  336 ttggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgca----ttaagcaattctgccaaagaaatt 431  Q
    ||||| ||||| | |||||||  || ||| ||||||||||| | |||||| |||||||| | ||||||||||    |||||||||| ||| |||||||||    
T  13812373 ttggccgctaaggttccttcagctggtgtgtcctctctcattagtcttctttgttcttgcgacttcaatgcattaattaagcaattttgcgaaagaaatt 13812274  T
Q  432 tttgagagatctttggtattctccaaagtagtgatggttgcttcat 477  Q
    ||||| | ||| ||| |||||||| ||||| || ||||||||||||    
T  13812273 tttgaaaaatccttgatattctcc-aagtaatgttggttgcttcat 13812229  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 13812490 - 13812423
Alignment:
Q  255 tgttgacatggaggataagattttcttcgaattacattattttctgttgcattggctgatgttgagcc 322  Q
    |||||||| || |||||||||||| || ||||| |||| |||||| |||||||||||  |||||||||    
T  13812490 tgttgacaaggcggataagattttttttgaatttcattcttttcttttgcattggctagtgttgagcc 13812423  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 7034846 - 7034765
Alignment:
Q  159 caaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaaagggtggatgac 240  Q
    ||||| ||||||||||| | |||||| ||||||||| | || || |||||||| |  |||||||||||||| || |||||||    
T  7034846 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgac 7034765  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 1542144 - 1542063
Alignment:
Q  159 caaataacagcttcatgccaaatttgattacacttggtacacttagcattaggccttctccaacatctaaagggtggatgac 240  Q
    ||||| ||||||||||| | |||||| ||||||||| | || || |||||||| |  |||||||||||||| || |||||||    
T  1542144 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgac 1542063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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