View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_12 (Length: 487)
Name: NF11645_low_12
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 24461304 - 24460821
Alignment:
| Q |
1 |
cgctttcttgtgcatca----catatgaattatttatagggtgacatttgtccaaagagtataaatacataatcattgcttgatttcataactcaaaaat |
96 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24461304 |
cgctttcttgtgcatcattgacatatgaattatttatagggtgacatttgtccaaagagtataaatacataatcattgcttgatttcataactaaaaaat |
24461205 |
T |
|
| Q |
97 |
attgtggtaatgaaatgagcaagatgagattagattttacatcaccttgctaatggagagtgttaaaatggttggaagcaattaaccttgtgaatctaat |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24461204 |
gttgtggtaatgaaatgagcaagatgagattagattttacatcaccttgctaatggagagtgttaaaatggttggaagcaattaaccttgtgaatctaat |
24461105 |
T |
|
| Q |
197 |
gacggtctcatcatagtaacaagaacaaaatcaaaaattaattacctcctccgtccctatatctaaccactcttttgattaaaaaatgcatctctacaat |
296 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24461104 |
gacggcctcatcatagtaacaagaacaaaatcaacaattaattacctcctctgtccctatatctaaccactcttttgattaaaaaatgcatctctacaat |
24461005 |
T |
|
| Q |
297 |
gcatggttgccgccaccggtggcggctaaaaccgccggtgaaagagattcctttgctcgtatcatcgcctctgtcaactcttccttcaaccgtgacgatc |
396 |
Q |
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||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
24461004 |
gcatggttgccgccaccggtggcagctcaaactgccggcgaaagagattcctttgctcgtatcatcgcctatgtcgactcttccttcaaccgtgatgatc |
24460905 |
T |
|
| Q |
397 |
ccgaatccttttattctactctcaaatacatctccgttcttgacatgttagttccatttttgaactcttcaattttgtctctgc |
480 |
Q |
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| T |
24460904 |
ccgaatccgtttattctactctcaaatacatctccgttcttgacatgttagttccatttttcaactcttcaattttgtctctgc |
24460821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 277 - 478
Target Start/End: Complemental strand, 24479187 - 24478986
Alignment:
| Q |
277 |
aaaaaatgcatctctacaatgcatggttgccgccaccggtggcggctaaaaccgccggtgaaagagattcctttgctcgtatcatcgcctctgtcaactc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
24479187 |
aaaaaatgcatctctacaatgcatggttgccgccaccggtggcggctcaaaccgccggtgaaagagattcctttgctcgcatcatcgccgccgtcaactc |
24479088 |
T |
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| Q |
377 |
ttccttcaaccgtgacgatcccgaatccttttattctactctcaaatacatctccgttcttgacatgttagttccatttttgaactcttcaattttgtct |
476 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |
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| T |
24479087 |
ttccttcaaccgtgacgatcccgaatccgtttattctactctcaaatacatctccgttcttgacctgttagttccatttttcaactcttcaattttctct |
24478988 |
T |
|
| Q |
477 |
ct |
478 |
Q |
| |
|
|| |
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|
| T |
24478987 |
ct |
24478986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 24479585 - 24479494
Alignment:
| Q |
120 |
atgagattagattttacatcaccttgctaatggagagtgttaaaatggttggaagcaattaaccttgtgaatctaatgacggtctcatcatagt |
213 |
Q |
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||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||| |||||||||| |
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| T |
24479585 |
atgagattatattttgcttcaccttgctaatggagagtgttaaaatagttggaagcaattaccct--tgaatctaatggcggcttcatcatagt |
24479494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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