View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_13 (Length: 475)
Name: NF11645_low_13
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 5894996 - 5895269
Alignment:
| Q |
18 |
cataaagcttaacagcatccttaagcattttcttcaaaataaagctttcatgaaaggaaagataggtattttctcctatcttgaatccagcactcctcat |
117 |
Q |
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| T |
5894996 |
cataaagcttcacagcatccttaagcattttcttcaaaataaagctttcatgaaaggaaagataggtattttctcctatcttgaatccagcactcctcat |
5895095 |
T |
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| Q |
118 |
atcataaactaacttccaaaactgatcaatcaaatactcgctttgaagaatcatcgccatcttagtgtgctttagttcgtcatgcttaaattgcccactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||| |
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| T |
5895096 |
atcataaactaacttccaaaactgatcaatcaaatactcgctttgaagaatcatcgccatcttagtatacttacgttcgtcatgcttaaactgcccactc |
5895195 |
T |
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| Q |
218 |
ttctccacccacctgaaaaatattagagctttattcggcgcatattctaaattttgcaaggccaactcaacaaat |
292 |
Q |
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| T |
5895196 |
ttctccacccacctgaaaaatattaaagctttactaggcacat-ttctaaattttgtaaggccaactcaacaaat |
5895269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 294 - 462
Target Start/End: Original strand, 5895313 - 5895482
Alignment:
| Q |
294 |
ttgataaagggtggcgaatttgaaatatttg-cgagaatatatcctctcaaatgtatccttatcaaacaattccatggatttcacagcctcaccatccat |
392 |
Q |
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| T |
5895313 |
ttgataaggggtggggaatttgaaatttttttcgagaatatatcctctcaaatctatccttatcaaacaattccctggatttcacagcctcaccatccat |
5895412 |
T |
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| Q |
393 |
tccacccttttcaaacttccttgcgttaacagcagcgtgactaatcgaaacgtgatttaaatcgaggtct |
462 |
Q |
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| T |
5895413 |
tccacacttttcaaacttccttccgttgacagcatcgtgactaatcgaaacgtgatttgaatcgaggtct |
5895482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 5880924 - 5880996
Alignment:
| Q |
335 |
tcctctcaaatgtatccttatcaaacaattccatggatttcacagcctcaccatccattccacccttttcaaa |
407 |
Q |
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||||||||| |||||||||||||||||| ||| | | |||||||| ||||||| |||||||||||||||||| |
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| T |
5880924 |
tcctctcaactgtatccttatcaaacaactccttcaacttcacagcatcaccattcattccacccttttcaaa |
5880996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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