View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_14 (Length: 456)
Name: NF11645_low_14
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 183 - 444
Target Start/End: Original strand, 55123596 - 55123857
Alignment:
| Q |
183 |
aagattaagatggttgaccgggtaaggtgattttgtcatgctccgagggtgtgaaagttgagctttccaccggtagaatatgaaccaatgaaaaacataa |
282 |
Q |
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| T |
55123596 |
aagattaagatggttgaccgggtaaggtgattttgtcatgctccgagggtgtgaaagttgagctttccaccggtagaatatgaaccaatgaaaaacataa |
55123695 |
T |
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| Q |
283 |
gcaagaaggggaagaagaagatgagtaattgaaagttgatggcagtgttgtgtaactgagccttgaagtttttgtactgagaaaaacataacaagctaat |
382 |
Q |
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| T |
55123696 |
gcaagaaggggaagaagaagatgagtaattgaaagttgatggcagtgttgtgtaactgagccttgaagtttttgtactgagaaaaacataacaagctaat |
55123795 |
T |
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| Q |
383 |
gacgatgccaaataccatgagcaagtggaatgggggtgcagaaacagaagccatgctctttc |
444 |
Q |
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| T |
55123796 |
gacgatgccaaataccatgaacaagtggaatgggggtgcagaaacagaagccatgctctttc |
55123857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 55123391 - 55123556
Alignment:
| Q |
10 |
tcatcacaatggacaaagaataatgcaagagggttttaaatatttatttgtgtttctcaaccaattcaggtgcatttaaattttaaagtaataatatcaa |
109 |
Q |
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| T |
55123391 |
tcataacaatggacaaagaataatgcaagagggttttaaatatttatttgtgtttctcaaccaattcaggtgcatttaaattttaaagtaataatatcaa |
55123490 |
T |
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| Q |
110 |
catatatacaaatatttatgtctatctttcttgctgagtaaatagattgatctctaatgcggtcca |
175 |
Q |
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| T |
55123491 |
catatatacaaatatttatgtctatctttcttgctgagtaaatagattgatctctaatgcggtcca |
55123556 |
T |
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