View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_16 (Length: 430)
Name: NF11645_low_16
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 37889447 - 37889242
Alignment:
| Q |
16 |
ttgaaaattttgtaggaaagaaacttgtttgtggaacaataacttccaaataggtaattacttcatttcatattcaagtaatttaaccaactcaattttg |
115 |
Q |
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| T |
37889447 |
ttgaaaattttgtaggaaagaaacttgtttgtggaacaataacttccaaataggtaattacttcatttcatattcaagt---ttaaccaactcaattttg |
37889351 |
T |
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| Q |
116 |
tcaaaaatcaccgttttcaagtgttcaccaaaagatacaaagtcgtcattattaatcaagacttatactcnnnnnnnccttcaccgtaaataaaggtata |
215 |
Q |
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| T |
37889350 |
tcaaaaatcaccgttttcaagtgttcaccaaaagatacaaagtcgtcattattaatcaagacttatactctttttttccttcaccgtaaataaaggtata |
37889251 |
T |
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| Q |
216 |
aaatttcca |
224 |
Q |
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||||||||| |
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| T |
37889250 |
aaatttcca |
37889242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 37889168 - 37889094
Alignment:
| Q |
298 |
atccaccagagatggtagtttttaggccacttttt-gttgtctggaaccaatccctttgcatcaattttcgtata |
371 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
37889168 |
atccaccagagatggtggtttttaggccacttttttgttgtccggaaccaatccatttgcatcaattttcgtata |
37889094 |
T |
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