View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_17 (Length: 427)
Name: NF11645_low_17
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 294944 - 295360
Alignment:
| Q |
1 |
atcaatggcaccaataagaacacctggtcttgcagttaagtatatccatatgagtccaccaaaaagaagaaactcccatctctgcatgtctgataattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
294944 |
atcaatggcaccaataagaacacctggtcttgcagttaagtatatccatatgagtccaccaaaaagaagaaactcccatctctgcatgtctgataattct |
295043 |
T |
|
| Q |
101 |
tgaaactgaagtagtcctgatcgaaggaaagaaggaatgtggcccccaccaacctccaacaaaccactggtgacattattatcaaaaaatgcattacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295044 |
tgaaactgaagtagtcctgatcgaaggaaagaaggaatgtggtccccaccaacctccaacaaaccactggtgacattattatcaaaaaatgcattacact |
295143 |
T |
|
| Q |
201 |
ttgtagtgttggtattgacacggtttgtgttagttaagaaagaaacatttgtaggttttaagggacagaagaaacagattgttgatgttcgatgcttaag |
300 |
Q |
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| T |
295144 |
ttgtagtgttggtattgacacggtttgtgttagttaagaaagaaacatttgtaggttttaagggacagaagaaacagattgttgatgttcgatgcttaag |
295243 |
T |
|
| Q |
301 |
tatagtggtaacagttggagttggatggagcaaagaagccatattgt-----tatgatatgatatgatgctcattcattcattcgttccaagttcaaact |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295244 |
tatagtggtaacagttggagttggatggagcaaagaagccatattgttatgatatgatatgatatgatgctcattcattcattcgttccaagttcaaact |
295343 |
T |
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| Q |
396 |
acaattaacatagtaac |
412 |
Q |
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| T |
295344 |
acaattaacatagtaac |
295360 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27490749 - 27490712
Alignment:
| Q |
1 |
atcaatggcaccaataagaacacctggtcttgcagtta |
38 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
27490749 |
atcaatagcaccaataagaacacctggtcttgcagtta |
27490712 |
T |
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