View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_19 (Length: 408)
Name: NF11645_low_19
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 6884970 - 6884571
Alignment:
| Q |
1 |
gttatatctggtggcatgtcaatacctcaagtaatgactactggagatgctcatgccaaacttgcctcaagaatccccatatcctttgcaacatcaaaag |
100 |
Q |
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| T |
6884970 |
gttatatctggtggcatgtcaatacctcaagtaatgactactggagatgctcatgccaaacttgcctcaagaatccccatatcctttgcaacatcaaaag |
6884871 |
T |
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| Q |
101 |
tataatgatgggatagtttgtgagcacaagtgtgtgttcatttcaattgtggtttctgtgttgatcatagtaaatagaattttgtattatctctaggttg |
200 |
Q |
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| T |
6884870 |
tataatgatgggataatttgtgagcacaagtgtgtgttcatttcaattgtggtttctgtgttgatcatagtaaatagaattttgtattatctctaggttg |
6884771 |
T |
|
| Q |
201 |
tccatttatttatttattttaagaaggttgtccactttattcgttcaattgctcaatcatatggattttgattagtttacttt-ttttagtagaaaatgc |
299 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6884770 |
tccatttatttatttattttaagaaggttgtccattttattcgttcaattgctcaatcatatggattttgattagtttactttcctttagtagaaaatgc |
6884671 |
T |
|
| Q |
300 |
a-------nnnnnnnnnnatatagctattggtgtgtagttccacgattggatttagatttgttatttaggacgttttttcattaaaatgatccatgaatg |
392 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6884670 |
ataatttttattttttttatatagctattggtgtgtagttccacgattggatttagatttgttatttaggacgttttttcattaaaatgatccataaatg |
6884571 |
T |
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