View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_2 (Length: 664)
Name: NF11645_low_2
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 3e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 265 - 482
Target Start/End: Complemental strand, 40382784 - 40382567
Alignment:
| Q |
265 |
catttaagtaggtgtgactaaaccttttttatttatatttgtgttcaagtaaaatttggtcaatttaagttattttaaaagattgtagatatatcactac |
364 |
Q |
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| T |
40382784 |
catttaagtggatgtggctaaaccttttttatttatatttgtgttcaagcaaaatttggtcaatttaagttattttaaaagattgtagatatatcactac |
40382685 |
T |
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| Q |
365 |
tgaaaaaagattgtagatatatataggcagaatgataaaaattaatgaaatcttaaagataaggtttgaatcaaatcacaatgttatgtgtaaccatttc |
464 |
Q |
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| T |
40382684 |
tgcaaaaagattttagatatatataagcaaaatgataaaaattaatgaaatcttgaaaataaggtttgaatcaaatcacaatgttatgtgtaaccatttc |
40382585 |
T |
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| Q |
465 |
aatatttttatgttaaag |
482 |
Q |
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||||||||||| |||||| |
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| T |
40382584 |
aatatttttatcttaaag |
40382567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 479 - 650
Target Start/End: Complemental strand, 40382497 - 40382326
Alignment:
| Q |
479 |
aaagacgatagttactaaaggatcaaactccttgtatcaaaagtctttatgacaataatcgttcgatagtctatttcattgatgttgtggtaacgacaat |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || | |||| |
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| T |
40382497 |
aaagacgatagttactaaaggatcaaactccttgtatcgaaagtctttctgacaataatcgttcgatggtctatttcattgatgttgtggcaatggcaat |
40382398 |
T |
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| Q |
579 |
gcaaatgaaatgaaaaagcttccatttgataggaagattgttgtgtaacaagcgagtcagaaactccatatt |
650 |
Q |
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| T |
40382397 |
gcaaatggaatgaaaaagcttccacttgataggaagattgttgtgtaacaagcgagtcagaaactccatatt |
40382326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 40383038 - 40382915
Alignment:
| Q |
8 |
gtcgtgccggtagtaattatgtcgatctcatttttacatttcacctcaagccacggttcaccttcggttgttaactgggcccataccacgcacgtggcac |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383038 |
gtcgtgccggtagtaattatgtcgatctaatttttacatttcacctcaagccacggttcaccttcggttgttaactgggcccataccacgcacgtggcac |
40382939 |
T |
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| Q |
108 |
cctaggacaaacagcttagataag |
131 |
Q |
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||||| ||||||| |||||||||| |
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| T |
40382938 |
cctagtacaaacaacttagataag |
40382915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 37413323 - 37413360
Alignment:
| Q |
276 |
gtgtgactaaaccttttttatttatatttgtgttcaag |
313 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |
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| T |
37413323 |
gtgtgcctaaaccttttttatttgtatttgtgttcaag |
37413360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 13718964 - 13718932
Alignment:
| Q |
284 |
aaaccttttttatttatatttgtgttcaagtaa |
316 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
13718964 |
aaaccttttttatttgtatttgtgttcaagtaa |
13718932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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