View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_20 (Length: 402)
Name: NF11645_low_20
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 31859329 - 31858928
Alignment:
| Q |
1 |
gatgttgcaagctcagatggttctgacatatctgaaattggtagttctaatcttgtaactgccaatggagacaaacaaagagaagagggagttagaatca |
100 |
Q |
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| T |
31859329 |
gatgttgcaagctcagatggttctgacatatctgaaattggtagttctaatcttgtaactgccaatggagagaaacaaagagaagaggtagttagaatca |
31859230 |
T |
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| Q |
101 |
atccatcatcactataccagaaaagtaactgcttattaggattaagtaatggatacatggaacataaagaagcatttatttcaacaagagcaaaaggtga |
200 |
Q |
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| T |
31859229 |
atccatcatcactataccagaaaagtaactgcttattaggattaagtaatggatacatggaacataaagaagcatttatttcaacaagagcaaaaggtga |
31859130 |
T |
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| Q |
201 |
agattctaaaggtagtgaaacaagtagggttagtggttcaagtaaagctatgaatggaaagaagtctcttgaaggtttgaggatattgcttgcagaagat |
300 |
Q |
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| T |
31859129 |
agattctaaaggtggtgaaacaagtagggttagtggttcaagtaaagctatgaatggaaagaagtctcttgaaggtttgaggatattgcttgcagaagat |
31859030 |
T |
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| Q |
301 |
acagcagtaattcaaagggtggcaaccataatgcttgaaaaaatgggagccaccgtcgttgctgtaggtgacggacaacaggcggtggatgctctaaatg |
400 |
Q |
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| T |
31859029 |
acagcagtaattcaaagggtggcaaccataatgcttgaaaaaatgggagccaccgttgttgctgtaggcgacggacaacaggcggtggatgctctaaatg |
31858930 |
T |
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| Q |
401 |
gc |
402 |
Q |
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| T |
31858929 |
gc |
31858928 |
T |
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Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 259 - 395
Target Start/End: Original strand, 8870188 - 8870324
Alignment:
| Q |
259 |
aagaagtctcttgaaggtttgaggatattgcttgcagaagatacagcagtaattcaaagggtggcaaccataatgcttgaaaaaatgggagccaccgtcg |
358 |
Q |
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||||| || ||||| || || ||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| || | |
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| T |
8870188 |
aagaaatcacttgaggggttaaggattttgcttgcagaagatacaccagtaattcaaagggttgcaacaataatgcttgaaaaaatgggagctgttgttg |
8870287 |
T |
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| Q |
359 |
ttgctgtaggtgacggacaacaggcggtggatgctct |
395 |
Q |
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| T |
8870288 |
ttgctgtaggtgatggacaacaagcagtggatgctct |
8870324 |
T |
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