View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_23 (Length: 368)
Name: NF11645_low_23
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 92 - 358
Target Start/End: Original strand, 43379892 - 43380147
Alignment:
| Q |
92 |
cgcagtcgcagatagtggaaaataaaagaagaatggtattgaagaacagatattggattgtgaggcatggcaagagcattcccaacgagcgaggccttat |
191 |
Q |
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| T |
43379892 |
cgcagtcgaagatagtggaaaataaaagaagaatggtattgaagaacagatattggattgtgaggcatggcaagagcattcccaacgagcgaggccttat |
43379991 |
T |
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| Q |
192 |
tgtttcttccatggtaacaatccattagatttttatataatcgcgttgtttttcatttataattataatcatcatgtttaaattcaattcacaggaaaat |
291 |
Q |
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| T |
43379992 |
tgtttcttccatggtaacaatccattagatttttatataatcgcgttgtttttcat------ttataatcatcatgttta-----aattcacaggaaaat |
43380080 |
T |
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| Q |
292 |
ggtattctccctgaattccaattggccccagaaggcgttaatcaagcacaactcgctggatattcat |
358 |
Q |
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| T |
43380081 |
ggtattctccctgaattccaattggccccagaaggcgttaatcaagcacaactcgctggatattcat |
43380147 |
T |
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