View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_low_24 (Length: 346)

Name: NF11645_low_24
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_low_24
NF11645_low_24
[»] chr4 (5 HSPs)
chr4 (19-335)||(23587363-23587679)
chr4 (18-342)||(23596208-23596532)
chr4 (24-173)||(54396650-54396799)
chr4 (29-175)||(9335681-9335827)
chr4 (29-158)||(30775484-30775613)
[»] chr7 (15 HSPs)
chr7 (17-342)||(8017036-8017361)
chr7 (17-206)||(8102887-8103076)
chr7 (25-275)||(39985874-39986124)
chr7 (23-158)||(8610143-8610278)
chr7 (29-175)||(13333246-13333392)
chr7 (34-170)||(8585501-8585637)
chr7 (23-175)||(8602200-8602352)
chr7 (29-260)||(8667651-8667882)
chr7 (35-158)||(17268177-17268300)
chr7 (46-152)||(8538285-8538391)
chr7 (29-175)||(10494164-10494310)
chr7 (29-173)||(8659595-8659739)
chr7 (127-260)||(8671335-8671468)
chr7 (40-175)||(3147515-3147650)
chr7 (52-175)||(7877523-7877646)
[»] chr2 (3 HSPs)
chr2 (29-175)||(16657307-16657453)
chr2 (34-173)||(17716485-17716624)
chr2 (85-173)||(12234977-12235065)
[»] chr1 (1 HSPs)
chr1 (29-173)||(4678350-4678494)
[»] chr6 (1 HSPs)
chr6 (34-160)||(11156507-11156633)
[»] chr8 (2 HSPs)
chr8 (40-113)||(42272433-42272506)
chr8 (40-149)||(42324520-42324629)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 23587679 - 23587363
Alignment:
Q  19 cttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587679 cttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttg 23587580  T
Q  119 tagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcat 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23587579 tagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaagataagcctctgcaatctccttcattttcat 23587480  T
Q  219 aagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttg 318  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587479 aagaaccatagaagatatctcttcagcggaaaattgcttctcttccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttg 23587380  T
Q  319 aacggccacaatttcat 335  Q
    |||||||||||||||||    
T  23587379 aacggccacaatttcat 23587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 23596532 - 23596208
Alignment:
Q  18 acttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatctttt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||||||||||||||||||||| ||||| ||     
T  23596532 acttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatcctta 23596433  T
Q  118 gtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttca 217  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| ||||    
T  23596432 gtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctccttcatcttca 23596333  T
Q  218 taagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgacctt 317  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596332 taagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttgtcagcagggccaggaatgacctt 23596233  T
Q  318 gaacggccacaatttcatctcactc 342  Q
    |||||||||||||||||| ||||||    
T  23596232 gaacggccacaatttcatgtcactc 23596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 54396650 - 54396799
Alignment:
Q  24 agctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagct 123  Q
    |||||||||||| | |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| ||||||    
T  54396650 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 54396749  T
Q  124 tgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 173  Q
    ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  54396750 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 54396799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 9335827 - 9335681
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||   ||| |||||| | || || |  ||    
T  9335827 tcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcg 9335728  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 175  Q
    ||| ||||| ||||||||||| ||||| || ||||||||||||||||    
T  9335727 ctgagaatcattgaagtaagctggcacggtaacaacggcattcttga 9335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 30775484 - 30775613
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||| ||||| ||||| |||||||| || ||||| || |||||||| |||||||  ||||| || |||| |||| |||| |||||  | || ||||  ||    
T  30775484 tcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcg 30775583  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagt 158  Q
    ||||| ||| ||||| ||||||||||||||    
T  30775584 ctgtgcatcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 8017361 - 8017036
Alignment:
Q  17 cacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttt 116  Q
    |||||||||| || || ||||| || || |||||||| ||||| || || || || ||||||||||| ||||||||||| | ||||||||||||||| ||    
T  8017361 cacttgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctt 8017262  T
Q  117 tgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttc 216  Q
    ||| ||||||||||| ||||| ||||||||||| || || || |||||||||||||| |  |||| ||| || ||||| || ||||||||   ||| ||     
T  8017261 tgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatcttt 8017162  T
Q  217 ataagaaccatagaagatatctcttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgacct 316  Q
    || || |||||||| || || || ||||| | ||||||||| |||||  | |||||||| ||  | |||||||| || ||| |||| |||| ||| ||||    
T  8017161 atgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttttcaccaggaccagcaataacct 8017062  T
Q  317 tgaacggccacaatttcatctcactc 342  Q
    | || |||||||| ||||| ||||||    
T  8017061 taaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 8102887 - 8103076
Alignment:
Q  17 cacttgtagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttt 116  Q
    ||||||| || || || |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |  ||||  || ||||| ||||||||    
T  8102887 cacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatcttt 8102986  T
Q  117 tgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctc 206  Q
     || ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| || ||   |||||||||||| || ||||||||    
T  8102987 agttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaatggtgacaccaagataagcttcggcaatctc 8103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 39985874 - 39986124
Alignment:
Q  25 gctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagctt 124  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||||| ||||||| ||  ||||| || || | ||| || || ||||| || |||||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagctt 39985973  T
Q  125 gacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaac 224  Q
    ||||||| || || || ||||||||||| ||||| ||||| |||||||| || |  | |||||| || || || ||||||||   ||| ||||| || ||    
T  39985974 gacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcacgcatcttcattagcac 39986073  T
Q  225 catagaagatatctcttcagcggaaaattgcttctcctccgctttgtagtt 275  Q
    ||| ||||| |||||||| || | ||||| ||| || ||  ||||||||||    
T  39986074 catggaagagatctcttcggcagcaaattccttatcttcacctttgtagtt 39986124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 8610143 - 8610278
Alignment:
Q  23 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 122  Q
    ||||| |||| | ||||||||| |||| ||| ||||| || |||||||| ||||| |  |  ||||| || |||||||||||||| ||||||||||| ||    
T  8610143 tagctctcttctgaagaccatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggc 8610242  T
Q  123 ttgacgctgtgaatcgttgaagtaagcaggcacagt 158  Q
    ||  ||||| ||||| || || ||||||||||||||    
T  8610243 tttccgctgagaatcattaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 13333392 - 13333246
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || ||||  |  | ||| || |||| |||  |||| |||||| | || || |  ||    
T  13333392 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcg 13333293  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 175  Q
    ||| ||||| ||||||||||| |||||||| ||||||||||||||||    
T  13333292 ctgagaatcattgaagtaagccggcacagtaacaacggcattcttga 13333246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 8585637 - 8585501
Alignment:
Q  34 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 133  Q
    ||||| ||||| |||||||| |||||||| |||||||| || || ||||  ||||| || |||| |||| |||| |||||  | || ||||  ||||| |    
T  8585637 tcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgag 8585538  T
Q  134 aatcgttgaagtaagcaggcacagttacaacggcatt 170  Q
    |||| ||||| |||||||||||||| ||||| |||||    
T  8585537 aatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 8602200 - 8602352
Alignment:
Q  23 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 122  Q
    ||||| |||| | ||| ||||| |||| |||||| ||||| || ||||| || || | ||  |||||||| |||| |||| |||| ||||||||||| ||    
T  8602200 tagctctcttttgaaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggc 8602299  T
Q  123 ttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 175  Q
    ||  ||||| ||||| || || ||||| |||||||| ||||| ||||||||||    
T  8602300 ttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttga 8602352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 8667651 - 8667882
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||| ||||| ||||| |||||||| || |||||||||||||| || || |  |  ||||| ||||||| |||   ||| |||||| | || || |  ||    
T  8667651 tcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcg 8667750  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccata 228  Q
    ||| ||||| ||||||||||| |||||||| |||||||||||||||| ||  |  || ||||| ||||| |||| |||   ||| ||  |||| ||||||    
T  8667751 ctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccata 8667850  T
Q  229 gaagatatctcttcagcggaaaattgcttctc 260  Q
    |||||||| || |||||  |||| ||||||||    
T  8667851 gaagatatttcctcagcacaaaagtgcttctc 8667882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 17268177 - 17268300
Alignment:
Q  35 caagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtga 134  Q
    |||| ||||| |||||||| |||||||| |||||||| || |   |||| ||||| || |||| ||||||||| |||||| | || ||||  ||||| ||    
T  17268177 caaggccatatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgaga 17268276  T
Q  135 atcgttgaagtaagcaggcacagt 158  Q
    ||||||||||||||| || |||||    
T  17268277 atcgttgaagtaagccgggacagt 17268300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 8538285 - 8538391
Alignment:
Q  46 gcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagt 145  Q
    |||| ||||||||| ||||||||||| || || | ||  |||||||| |||| ||||||||| |||||||| || |||   ||||||||||| ||||| |    
T  8538285 gcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaat 8538384  T
Q  146 aagcagg 152  Q
    |||||||    
T  8538385 aagcagg 8538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 10494310 - 10494164
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||  |||| |||||  | ||||| |  ||    
T  10494310 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcg 10494211  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 175  Q
     || ||||||||||||||||| |||||||| ||||| ||||||||||    
T  10494210 ttgagaatcgttgaagtaagccggcacagtaacaacagcattcttga 10494164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 8659595 - 8659739
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaa-cacattgagtccagaaatgacaccggcatcttttgtagcttgac 127  Q
    |||| |||| |||||| |||||||| |||||||||||||||||||| | ||| ||  ||||| || |||| |||| |||||| |||| | || ||||  |    
T  8659595 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaatta-tctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttc 8659693  T
Q  128 gctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 173  Q
    |||| ||||| ||||| || |||||||| || ||||| ||||||||    
T  8659694 gctgagaatcattgaactatgcaggcactgtaacaacagcattctt 8659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 8671468 - 8671335
Alignment:
Q  127 cgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaacca 226  Q
    ||||| ||||| ||||||||||| ||||| || |||||||||||||||| || ||   | ||||| ||||| |||| |||   ||| ||  |||| ||||    
T  8671468 cgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcacca 8671369  T
Q  227 tagaagatatctcttcagcggaaaattgcttctc 260  Q
    |||||||||| || |||||  |||||||||||||    
T  8671368 tagaagatatttcctcagcacaaaattgcttctc 8671335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 3147515 - 3147650
Alignment:
Q  40 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 139  Q
    ||||| |||||||| ||||||||||||||||| || || | ||  | ||| || |||| ||| ||||| |||||| |||| ||||  ||||| | ||| |    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttccgctgagcatcat 3147614  T
Q  140 tgaagtaagcaggcacagttacaacggcattcttga 175  Q
    |||| |||||||| || || ||||| ||||||||||    
T  3147615 tgaaataagcaggtacggtaacaactgcattcttga 3147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 7877646 - 7877523
Alignment:
Q  52 gcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcag 151  Q
    ||||||||||| ||||||||||| || | ||  |||||||| || | ||   |||| ||||||||||| ||||  || || ||||| ||||| ||||| |    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccg 7877547  T
Q  152 gcacagttacaacggcattcttga 175  Q
    ||||||| ||||| ||||||||||    
T  7877546 gcacagtaacaactgcattcttga 7877523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 16657453 - 16657307
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| |||||||  |  ||||| || ||||  ||| |||| |||||| | || ||||  ||    
T  16657453 tcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcg 16657354  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 175  Q
    ||| ||||| ||||||||||| |||||||| ||||| ||||||||||    
T  16657353 ctgcgaatcattgaagtaagctggcacagtaacaacagcattcttga 16657307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 17716624 - 17716485
Alignment:
Q  34 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 133  Q
    |||| |||||||||||| || |||||||| || ||||||||||||||||  | ||| || |||| |||  |||| ||||  || |||||||| | ||| |    
T  17716624 tcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgag 17716525  T
Q  134 aatcgttgaagtaagcaggcacagttacaacggcattctt 173  Q
    ||   || ||||||||||| ||||| ||||||||||||||    
T  17716524 aaaaattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 12234977 - 12235065
Alignment:
Q  85 acattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 173  Q
    |||||||| |||| ||||||||| |||||| | || ||||  || || ||||| ||||| ||||||||||| || ||||| ||||||||    
T  12234977 acattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 4678494 - 4678350
Alignment:
Q  29 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 128  Q
    |||| |||| |||||| |||||||| ||| |||||||||| || || |||   |  ||||| ||||||| |||| |||| |||||| | |||||||  ||    
T  4678494 tcttgtcaaaaccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 4678395  T
Q  129 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 173  Q
     || ||||| |||||||| ||||||||||| |||||| |||||||    
T  4678394 ttgagaatcattgaagtatgcaggcacagtaacaacgacattctt 4678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 11156507 - 11156633
Alignment:
Q  34 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 133  Q
    ||||||||||| ||||| ||||| |||| ||| ||||| || |||| ||  |||||||| |||| ||| ||||| |||||||  || |  || || ||||    
T  11156507 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtg 11156606  T
Q  134 aatcgttgaagtaagcaggcacagtta 160  Q
    | || || |||||||||||||||||||    
T  11156607 agtcattaaagtaagcaggcacagtta 11156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 42272506 - 42272433
Alignment:
Q  40 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatc 113  Q
    ||||||||||| |||||||| || ||||||||||| |||||   |||||| |  |||| |||||||||||||||    
T  42272506 ccataagcaatggcagcagcggtgggttcattaatgattctagccacattcaaaccagcaatgacaccggcatc 42272433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 42324629 - 42324520
Alignment:
Q  40 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 139  Q
    ||||||||||| |||||||| |||||||| ||||| |||||   |||||| |  |||| ||||||||||||||| || || || || | ||| | ||| |    
T  42324629 ccataagcaatggcagcagcggtaggttcgttaatgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcat 42324530  T
Q  140 tgaagtaagc 149  Q
    ||||||||||    
T  42324529 tgaagtaagc 42324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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