View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_25 (Length: 337)
Name: NF11645_low_25
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 7719073 - 7718952
Alignment:
| Q |
214 |
gaaaattctcacccatgaagaaaatggaaagggaaattagaagtttcgttgctgaaatt-----------ttgggaatggatgtggaatttgagatgtta |
302 |
Q |
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| T |
7719073 |
gaaaattctctcccatgaagaaaatggaaagggaaattagaagtttcgttgctgaaattttggagttattttgggaatggatgtggaatttgagatgtta |
7718974 |
T |
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| Q |
303 |
gtggattttgtttttgttttct |
324 |
Q |
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| T |
7718973 |
gtggattttgattttgttttct |
7718952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 7719261 - 7719186
Alignment:
| Q |
21 |
cctatctttttcaattgtttttcaatgaaattaaaagtcaaagtgaattttgaagtttcgttgctgtaattgttga |
96 |
Q |
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| T |
7719261 |
cctatctttttcaattgtttttcaataaaattaaaagtgaaagtgaattttgaagtttctttgctgtaattgttga |
7719186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 7718833 - 7718787
Alignment:
| Q |
271 |
ttttgggaatggatgtggaatttgagatgttagtggattttgttttt |
317 |
Q |
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| T |
7718833 |
ttttggaaatggatatggaatttgagatgttagtggattttgatttt |
7718787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 7719173 - 7719140
Alignment:
| Q |
114 |
ggagaatgtatatgaaaattgagatgttactgga |
147 |
Q |
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| T |
7719173 |
ggagaatgtatatgaaaattgagatgttactgga |
7719140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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