View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_28 (Length: 328)
Name: NF11645_low_28
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 12003793 - 12004092
Alignment:
| Q |
11 |
cagagaggctaacaaatacagcaaacaaaaagagcaagagaccagtgaaattgactattagtgactcttggtttctgaagagatctagaaatcgagaata |
110 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12003793 |
cagagaggctaacaaagacagcaaacaaaaacagcaagagaccagtgaaattgactattagtgactcttggtttctgaagagatctaaaaatcgagaata |
12003892 |
T |
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| Q |
111 |
ttcaaccaaacccgtctctgctgtgccaactgcaaggaagaatattaccattcctatgaacttgtgccatggtaaaaatgtagcttttgcagaagattct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12003893 |
ttcaaccaaacccgtctctgctgtgccaactgcaaggaagaatattaccattcctatgaacttgtgccatggtaaaaatgtagcttttgcagaagattct |
12003992 |
T |
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| Q |
211 |
gctcctgggaagaagtaagcaaagaaggccactatatactgaaaaatgaaaagaagatgaagaaatagtcttagcttaatttatatttatatgtatatag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12003993 |
gctcctgggaagaagtaagcaaagaaggccactatatactgaaaaatgaaaagaagatgaagaaatagtcttagcttaatttatatttatacgtatatag |
12004092 |
T |
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