View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_3 (Length: 635)
Name: NF11645_low_3
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 1836651 - 1837267
Alignment:
| Q |
18 |
aaattttgtgcacctacgaggaaactcacttccaaagagtttcacctgaaagctaggtacgcacaatcacaatatctataaatacctttctatggcatag |
117 |
Q |
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| T |
1836651 |
aaattttgtgcacctacgaggaaactcacttccaaagagtttcacctgaaagctaggtacgcacaatcacaatatctataaatacctttctatggcatag |
1836750 |
T |
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| Q |
118 |
acaaaatttctcactagaaagtatcaatatcaagtaccaactaacatggacataattatatttcgataaaaactatacttaatttgcatgaacaatgtct |
217 |
Q |
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| T |
1836751 |
acaaaatttctcactagaaagtaacaatatcaagtaccaactaacattgacataaatatatttcgataaaaactatacttaatttgcatgaacaatgtct |
1836850 |
T |
|
| Q |
218 |
tcaagtggtgctgctagttctgcatacagaggagtccgtaagagaaaatggggtaaatgggtttccgaaattcgtgagcccggcaccaaaacaagaatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1836851 |
tcaagtggtgctgctagttctgcatacagaggagtccgtaagagaaaatggggtaaatgggtttccgaaattcgcgagcccggcaccaaaacaagaatct |
1836950 |
T |
|
| Q |
318 |
ggttaggaagtttcgagacaccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaact |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836951 |
ggttaggaagtttcgagacaccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaact |
1837050 |
T |
|
| Q |
418 |
tgcaaacactcttcctcgtcctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagag------ccaacatgttg |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1837051 |
tgcaaacactcttcctcgtcctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgttg |
1837150 |
T |
|
| Q |
512 |
gcgccaccagataacaacagtggaacag---gctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcga |
608 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837151 |
gcgccactagataacaacagtggaacaggctgctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcga |
1837250 |
T |
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| Q |
609 |
ttaatgattcgcctatg |
625 |
Q |
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|||| |||||||||||| |
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| T |
1837251 |
ttaacgattcgcctatg |
1837267 |
T |
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